KMC000978A_c02
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC000978A_C02 KMC000978A_c02
caacacctcctcccgtcacgcacacagatatacactagagtacatgcagccccaacacct
cctgtgtaacgcttttctgaTTCAAATCTCCTACAGCCACCACCACCTGCTACGCCATGG
CCGCCGCCGGAGCCTGTCTCTTAACCGGCGCTAATTCCTCCCTGCTCTTCCGCCGGGAGC
CATCGTCATCTGCCGGGAAATTGAAGTCGGTCCTATTCCAAAGCACGAATCCACGCTTCG
CTGTGTCTGTCGACCGTGTCTCAGCGATGGCGGAGAAAGGAAGTCCGGCGGAGATGAAAC
GAGAAGAAAGAAGCAGCGGTGCGGCACAGAGTGAGAAAAACCGTTGGGAGGGGATGGAGG
AAGAGGAGACGGAGAAGGTGAAGCAGCGGCGGAGCGGTTGGAAGGATTACTTTGAGCAAG
CGAAGGAGTTGATCAAACCGGACGGGTGGGCCACCGCGGTGGTTTTCGCCGTGGGAGTGT
GGTTCGCGGCTGGACAACTCGCCTCTGCTGCTCTTCTTGCCAGTGTCTATGCAATTGAAC
CTTTAATTTCATGTATATAGAACTCTTTGACATGGAGGGGCATAACAGCAAAAACGAAAT
TATGAAGCAATGTTGCAGCACTTGTGCCAGACTAATAGTGAAGTGGCATGGATGATGGGA
CGGTGAAGAAGGGGAGCTGCGTGGGTGGGTAGTGTGTGCGGTTGGGGAAGCGCCGTCCAA
CACCCTCCATGCCGCGACGGTGGTCACTGGCAGCGGAAGCTTCCGATGAACATGCAACAA
ACAATACCCTTAATCCATCACTCCTCATCATCGGAATGCCACGCCAATCTCCGGATGGAT
GGCGTCGGACTTGGACTTATTTTACATCATCAGAAA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000978A_C02 KMC000978A_c02
(876 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564662.1| expressed protein; protein id: At1g54570.1, sup... 45 1e-05
ref|NP_566801.1| expressed protein; protein id: At3g26840.1, sup... 51 3e-05
ref|NP_198928.2| putative protein; protein id: At5g41120.1, supp... 50 4e-05
dbj|BAB09714.1| gb|AAC64874.1~gene_id:MEE6.19~strong similarity ... 50 4e-05
ref|NP_198929.1| putative protein; protein id: At5g41130.1 [Arab... 50 4e-05
>ref|NP_564662.1| expressed protein; protein id: At1g54570.1, supported by cDNA:
25383. [Arabidopsis thaliana] gi|25405748|pir||G96587
hypothetical protein T22H22.2 [imported] - Arabidopsis
thaliana gi|3776557|gb|AAC64874.1| Contains similarity
to gi|2924495 hypothetical protein Rv1920 from
Mycobacterium tuberculosis genome gb|AL022020.
[Arabidopsis thaliana] gi|21554386|gb|AAM63493.1|
unknown [Arabidopsis thaliana]
gi|26452000|dbj|BAC43090.1| unknown protein [Arabidopsis
thaliana] gi|29029028|gb|AAO64893.1| At1g54570
[Arabidopsis thaliana]
Length = 704
Score = 45.4 bits (106), Expect(2) = 1e-05
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +1
Query: 445 GGPPRWFSPWECGSRLDNSPLLLFLP 522
GGPPRWFSP +CG ++++P LLFLP
Sbjct: 107 GGPPRWFSPVDCGRPVEDAPTLLFLP 132
Score = 26.2 bits (56), Expect(2) = 1e-05
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = +3
Query: 402 KDYFEQAKELIKPDG 446
KDYF AKE++K DG
Sbjct: 93 KDYFAAAKEILKADG 107
>ref|NP_566801.1| expressed protein; protein id: At3g26840.1, supported by cDNA:
gi_13430465, supported by cDNA: gi_15810662 [Arabidopsis
thaliana] gi|9279674|dbj|BAB01231.1|
gb|AAC64874.1~gene_id:MDJ14.16~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|13430466|gb|AAK25855.1|AF360145_1 unknown protein
[Arabidopsis thaliana] gi|15810663|gb|AAL07256.1|
unknown protein [Arabidopsis thaliana]
Length = 701
Score = 50.8 bits (120), Expect = 3e-05
Identities = 20/26 (76%), Positives = 23/26 (87%)
Frame = +1
Query: 445 GGPPRWFSPWECGSRLDNSPLLLFLP 522
GGPPRWFSP ECG++ NSPLLL+LP
Sbjct: 102 GGPPRWFSPLECGAQATNSPLLLYLP 127
>ref|NP_198928.2| putative protein; protein id: At5g41120.1, supported by cDNA:
gi_17979136, supported by cDNA: gi_20465348 [Arabidopsis
thaliana] gi|17979137|gb|AAL49826.1| unknown protein
[Arabidopsis thaliana] gi|20465349|gb|AAM20078.1|
unknown protein [Arabidopsis thaliana]
Length = 684
Score = 50.1 bits (118), Expect = 4e-05
Identities = 20/26 (76%), Positives = 22/26 (83%)
Frame = +1
Query: 445 GGPPRWFSPWECGSRLDNSPLLLFLP 522
GGPPRWFSP ECG+R SPLLL+LP
Sbjct: 91 GGPPRWFSPLECGARAPESPLLLYLP 116
>dbj|BAB09714.1| gb|AAC64874.1~gene_id:MEE6.19~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 689
Score = 50.1 bits (118), Expect = 4e-05
Identities = 20/26 (76%), Positives = 22/26 (83%)
Frame = +1
Query: 445 GGPPRWFSPWECGSRLDNSPLLLFLP 522
GGPPRWFSP ECG+R SPLLL+LP
Sbjct: 91 GGPPRWFSPLECGARAPESPLLLYLP 116
>ref|NP_198929.1| putative protein; protein id: At5g41130.1 [Arabidopsis thaliana]
gi|9759159|dbj|BAB09715.1|
gb|AAC64874.1~gene_id:MEE6.20~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 702
Score = 50.1 bits (118), Expect = 4e-05
Identities = 20/26 (76%), Positives = 22/26 (83%)
Frame = +1
Query: 445 GGPPRWFSPWECGSRLDNSPLLLFLP 522
GGPPRWFSP ECG+R SPLLL+LP
Sbjct: 90 GGPPRWFSPLECGARAPESPLLLYLP 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 908,503,155
Number of Sequences: 1393205
Number of extensions: 24964021
Number of successful extensions: 222772
Number of sequences better than 10.0: 680
Number of HSP's better than 10.0 without gapping: 111011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190388
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47103382053
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
GENLf091a12 |
BP067304 |
1 |
488 |
2 |
GNLf005e01 |
BP075082 |
404 |
876 |
|
Lotus japonicus
Kazusa DNA Research Institute