KMC000978A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC000978A_C02 KMC000978A_c02
caacacctcctcccgtcacgcacacagatatacactagagtacatgcagccccaacacct
cctgtgtaacgcttttctgaTTCAAATCTCCTACAGCCACCACCACCTGCTACGCCATGG
CCGCCGCCGGAGCCTGTCTCTTAACCGGCGCTAATTCCTCCCTGCTCTTCCGCCGGGAGC
CATCGTCATCTGCCGGGAAATTGAAGTCGGTCCTATTCCAAAGCACGAATCCACGCTTCG
CTGTGTCTGTCGACCGTGTCTCAGCGATGGCGGAGAAAGGAAGTCCGGCGGAGATGAAAC
GAGAAGAAAGAAGCAGCGGTGCGGCACAGAGTGAGAAAAACCGTTGGGAGGGGATGGAGG
AAGAGGAGACGGAGAAGGTGAAGCAGCGGCGGAGCGGTTGGAAGGATTACTTTGAGCAAG
CGAAGGAGTTGATCAAACCGGACGGGTGGGCCACCGCGGTGGTTTTCGCCGTGGGAGTGT
GGTTCGCGGCTGGACAACTCGCCTCTGCTGCTCTTCTTGCCAGTGTCTATGCAATTGAAC
CTTTAATTTCATGTATATAGAACTCTTTGACATGGAGGGGCATAACAGCAAAAACGAAAT
TATGAAGCAATGTTGCAGCACTTGTGCCAGACTAATAGTGAAGTGGCATGGATGATGGGA
CGGTGAAGAAGGGGAGCTGCGTGGGTGGGTAGTGTGTGCGGTTGGGGAAGCGCCGTCCAA
CACCCTCCATGCCGCGACGGTGGTCACTGGCAGCGGAAGCTTCCGATGAACATGCAACAA
ACAATACCCTTAATCCATCACTCCTCATCATCGGAATGCCACGCCAATCTCCGGATGGAT
GGCGTCGGACTTGGACTTATTTTACATCATCAGAAA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000978A_C02 KMC000978A_c02
         (876 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_564662.1| expressed protein; protein id: At1g54570.1, sup...    45  1e-05
ref|NP_566801.1| expressed protein; protein id: At3g26840.1, sup...    51  3e-05
ref|NP_198928.2| putative protein; protein id: At5g41120.1, supp...    50  4e-05
dbj|BAB09714.1| gb|AAC64874.1~gene_id:MEE6.19~strong similarity ...    50  4e-05
ref|NP_198929.1| putative protein; protein id: At5g41130.1 [Arab...    50  4e-05

>ref|NP_564662.1| expressed protein; protein id: At1g54570.1, supported by cDNA:
           25383. [Arabidopsis thaliana] gi|25405748|pir||G96587
           hypothetical protein T22H22.2 [imported] - Arabidopsis
           thaliana gi|3776557|gb|AAC64874.1| Contains similarity
           to gi|2924495 hypothetical protein Rv1920 from
           Mycobacterium tuberculosis genome gb|AL022020.
           [Arabidopsis thaliana] gi|21554386|gb|AAM63493.1|
           unknown [Arabidopsis thaliana]
           gi|26452000|dbj|BAC43090.1| unknown protein [Arabidopsis
           thaliana] gi|29029028|gb|AAO64893.1| At1g54570
           [Arabidopsis thaliana]
          Length = 704

 Score = 45.4 bits (106), Expect(2) = 1e-05
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +1

Query: 445 GGPPRWFSPWECGSRLDNSPLLLFLP 522
           GGPPRWFSP +CG  ++++P LLFLP
Sbjct: 107 GGPPRWFSPVDCGRPVEDAPTLLFLP 132

 Score = 26.2 bits (56), Expect(2) = 1e-05
 Identities = 10/15 (66%), Positives = 12/15 (79%)
 Frame = +3

Query: 402 KDYFEQAKELIKPDG 446
           KDYF  AKE++K DG
Sbjct: 93  KDYFAAAKEILKADG 107

>ref|NP_566801.1| expressed protein; protein id: At3g26840.1, supported by cDNA:
           gi_13430465, supported by cDNA: gi_15810662 [Arabidopsis
           thaliana] gi|9279674|dbj|BAB01231.1|
           gb|AAC64874.1~gene_id:MDJ14.16~strong similarity to
           unknown protein [Arabidopsis thaliana]
           gi|13430466|gb|AAK25855.1|AF360145_1 unknown protein
           [Arabidopsis thaliana] gi|15810663|gb|AAL07256.1|
           unknown protein [Arabidopsis thaliana]
          Length = 701

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 20/26 (76%), Positives = 23/26 (87%)
 Frame = +1

Query: 445 GGPPRWFSPWECGSRLDNSPLLLFLP 522
           GGPPRWFSP ECG++  NSPLLL+LP
Sbjct: 102 GGPPRWFSPLECGAQATNSPLLLYLP 127

>ref|NP_198928.2| putative protein; protein id: At5g41120.1, supported by cDNA:
           gi_17979136, supported by cDNA: gi_20465348 [Arabidopsis
           thaliana] gi|17979137|gb|AAL49826.1| unknown protein
           [Arabidopsis thaliana] gi|20465349|gb|AAM20078.1|
           unknown protein [Arabidopsis thaliana]
          Length = 684

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 20/26 (76%), Positives = 22/26 (83%)
 Frame = +1

Query: 445 GGPPRWFSPWECGSRLDNSPLLLFLP 522
           GGPPRWFSP ECG+R   SPLLL+LP
Sbjct: 91  GGPPRWFSPLECGARAPESPLLLYLP 116

>dbj|BAB09714.1| gb|AAC64874.1~gene_id:MEE6.19~strong similarity to unknown protein
           [Arabidopsis thaliana]
          Length = 689

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 20/26 (76%), Positives = 22/26 (83%)
 Frame = +1

Query: 445 GGPPRWFSPWECGSRLDNSPLLLFLP 522
           GGPPRWFSP ECG+R   SPLLL+LP
Sbjct: 91  GGPPRWFSPLECGARAPESPLLLYLP 116

>ref|NP_198929.1| putative protein; protein id: At5g41130.1 [Arabidopsis thaliana]
           gi|9759159|dbj|BAB09715.1|
           gb|AAC64874.1~gene_id:MEE6.20~strong similarity to
           unknown protein [Arabidopsis thaliana]
          Length = 702

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 20/26 (76%), Positives = 22/26 (83%)
 Frame = +1

Query: 445 GGPPRWFSPWECGSRLDNSPLLLFLP 522
           GGPPRWFSP ECG+R   SPLLL+LP
Sbjct: 90  GGPPRWFSPLECGARAPESPLLLYLP 115

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 908,503,155
Number of Sequences: 1393205
Number of extensions: 24964021
Number of successful extensions: 222772
Number of sequences better than 10.0: 680
Number of HSP's better than 10.0 without gapping: 111011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190388
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47103382053
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 GENLf091a12 BP067304 1 488
2 GNLf005e01 BP075082 404 876




Lotus japonicus
Kazusa DNA Research Institute