Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000975A_C03 KMC000975A_c03
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC51370.1| secretory mucin MUC6 [Homo sapiens] 36 0.55
ref|NP_595277.1| hypothetical protein; sequence orphan; low simi... 35 0.94
dbj|BAC04860.1| unnamed protein product [Homo sapiens] 34 2.1
ref|XP_030856.1| similar to KIAA1321 protein [Homo sapiens] 33 2.7
dbj|BAC03911.1| unnamed protein product [Homo sapiens] 33 2.7
>gb|AAC51370.1| secretory mucin MUC6 [Homo sapiens]
Length = 421
Score = 35.8 bits (81), Expect = 0.55
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Frame = +3
Query: 261 SITASDVLQQSLLNVSL*NSNQRPQT-SPFIPATLLLPPSEYQQI---SHLVQYPLGRRT 428
S + V + L+ S S P T S ++P++ P + + S V P+ T
Sbjct: 97 SSATTPVSTTNQLSSSFSPSPSAPSTVSSYVPSSHSSPQTSSPSVGTSSSFVSAPVHSTT 156
Query: 429 LIIGVISLKYSL*TQPEIISGSL-PLMRSALVSNVHINRS*PTISSTSSTESSSLTKSTI 605
L G S SL T P SGS PL S+ ++ I + P S+ T S+ L ST+
Sbjct: 157 LSSGSHS---SLSTHPTTGSGSASPLFPSSPAASTTIRATLPHTISSPFTLSALLPISTV 213
Query: 606 L*PPSSSNNILSFTLLGPAT 665
P+ S+++ S T+ P+T
Sbjct: 214 TVSPTPSSHLASSTIAFPST 233
>ref|NP_595277.1| hypothetical protein; sequence orphan; low similarity to
glycoamylases and other cell surface proteins; contains
~250-270 copies of a 13 AA repeat, NSSTPITSSSIL
[Schizosaccharomyces pombe] gi|13810411|emb|CAC37380.1|
hypothetical protein; sequence orphan; low similarity to
glycoamylases and other cell surface proteins; contains
~250-270 copies of a 13 AA repeat, NSSTPITSSSIL
[Schizosaccharomyces pombe] gi|14018379|emb|CAC38347.1|
hypothetical protein; sequence orphan; low similar to
glycoamylases and other cell surface proteins; contains
~250-270 copies of a 13 AA repeat, NSSTPITSSSIL;
predicted N-terminal signal sequence
[Schizosaccharomyces pombe]
Length = 3971
Score = 35.0 bits (79), Expect = 0.94
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALV-------SNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSS 626
T +++ S P+ S +V S+ +N S P SST+ S+ +T S++L +SS
Sbjct: 469 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVL---NSS 525
Query: 627 NNILSFTLLGPATSVAA 677
I S T L +TS+ +
Sbjct: 526 TPITSSTALNTSTSITS 542
Score = 35.0 bits (79), Expect = 0.94
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALV-------SNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSS 626
T +++ S P+ S +V S+ +N S P SST+ S+ +T S++L +SS
Sbjct: 2581 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVL---NSS 2637
Query: 627 NNILSFTLLGPATSVAA 677
I S T L +TS+ +
Sbjct: 2638 TPITSSTALNTSTSITS 2654
Score = 35.0 bits (79), Expect = 0.94
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALV-------SNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSS 626
T +++ S P+ S +V S+ +N S P SST+ S+ +T S++L +SS
Sbjct: 2905 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVL---NSS 2961
Query: 627 NNILSFTLLGPATSVAA 677
I S T L +TS+ +
Sbjct: 2962 TPITSSTALNTSTSITS 2978
Score = 35.0 bits (79), Expect = 0.94
Identities = 24/78 (30%), Positives = 43/78 (54%)
Frame = +3
Query: 444 ISLKYSL*TQPEIISGSLPLMRSALVSNVHINRS*PTISSTSSTESSSLTKSTIL*PPSS 623
I+ +L T I S S+ + + S+ +N S P SST+ S+ +T ST++ +S
Sbjct: 3384 ITSSTALNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSTVV---NS 3440
Query: 624 SNNILSFTLLGPATSVAA 677
S I S ++L +T++A+
Sbjct: 3441 STPITSSSVLNSSTAIAS 3458
Score = 33.9 bits (76), Expect = 2.1
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALV-------SNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSS 626
T +++ S P+ S +V S+ +N S P SST+ S+ +T ST+L +SS
Sbjct: 3001 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSTVL---NSS 3057
Query: 627 NNILSFTLLGPATSVAA 677
I S ++L +T + +
Sbjct: 3058 TPITSSSVLNSSTPITS 3074
Score = 33.1 bits (74), Expect = 3.6
Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 7/77 (9%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALV-------SNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSS 626
T +++ S P+ S +V S+ +N S P SST S+ +T ST+L +SS
Sbjct: 2185 TSSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVL---NSS 2241
Query: 627 NNILSFTLLGPATSVAA 677
I S ++L +T + +
Sbjct: 2242 TPITSSSVLNSSTPITS 2258
Score = 33.1 bits (74), Expect = 3.6
Identities = 24/78 (30%), Positives = 40/78 (50%)
Frame = +3
Query: 444 ISLKYSL*TQPEIISGSLPLMRSALVSNVHINRS*PTISSTSSTESSSLTKSTIL*PPSS 623
I+ +L T I S S+ + + S+ +N S P SST S+ +T ST+L +S
Sbjct: 2472 ITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVL---NS 2528
Query: 624 SNNILSFTLLGPATSVAA 677
S I S ++L +T + +
Sbjct: 2529 STPITSSSVLNSSTPITS 2546
Score = 33.1 bits (74), Expect = 3.6
Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 7/77 (9%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALV-------SNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSS 626
T +++ S P+ S +V S+ +N S P SST S+ +T ST+L +SS
Sbjct: 1345 TSSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVL---NSS 1401
Query: 627 NNILSFTLLGPATSVAA 677
I S ++L +T + +
Sbjct: 1402 TPITSSSVLNSSTPITS 1418
Score = 33.1 bits (74), Expect = 3.6
Identities = 24/78 (30%), Positives = 40/78 (50%)
Frame = +3
Query: 444 ISLKYSL*TQPEIISGSLPLMRSALVSNVHINRS*PTISSTSSTESSSLTKSTIL*PPSS 623
I+ +L T I S S+ + + S+ +N S P SST S+ +T ST+L +S
Sbjct: 2772 ITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVL---NS 2828
Query: 624 SNNILSFTLLGPATSVAA 677
S I S ++L +T + +
Sbjct: 2829 STPITSSSVLNSSTPITS 2846
Score = 33.1 bits (74), Expect = 3.6
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Frame = +3
Query: 264 ITASDVLQQSLLNVSL*NSNQRPQTSPFIPATLLLPPSEYQQISHLVQY--PLGRRTLII 437
IT+S VL S + S+ TSP I ++ ++ S S +V P+ T++
Sbjct: 1632 ITSSTVLNSS----TPITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVN 1687
Query: 438 GV--ISLKYSL*TQPEIISGSLPLMRSALVSNVHINRS*PTISSTSSTESSSLTKSTIL* 611
I+ +L T I S S+ + + S+ +N S P SST S+ +T ST++
Sbjct: 1688 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVV- 1746
Query: 612 PPSSSNNILSFTLLGPATSVAA 677
+SS I S T L +T + +
Sbjct: 1747 --NSSTPITSSTALNTSTPITS 1766
Score = 33.1 bits (74), Expect = 3.6
Identities = 22/70 (31%), Positives = 38/70 (53%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALVSNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSSNNILSFT 647
T +++ S P+ S++ +N S P SST+ S+ +T S++L +SS I S T
Sbjct: 2821 TSSTVLNSSTPITSSSV-----LNSSTPITSSTALNTSTPITSSSVL---NSSTPITSST 2872
Query: 648 LLGPATSVAA 677
L +TS+ +
Sbjct: 2873 ALNTSTSITS 2882
Score = 32.3 bits (72), Expect = 6.1
Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 7/77 (9%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALV-------SNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSS 626
T +++ S P+ S +V S+ +N S P SST S+ +T ST++ +SS
Sbjct: 1153 TSSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVV---NSS 1209
Query: 627 NNILSFTLLGPATSVAA 677
I S T+L +T + +
Sbjct: 1210 TPITSSTVLNTSTPITS 1226
Score = 32.3 bits (72), Expect = 6.1
Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 7/77 (9%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALV-------SNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSS 626
T +++ S P+ S +V S+ +N S P SST S+ +T ST++ +SS
Sbjct: 2245 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVV---NSS 2301
Query: 627 NNILSFTLLGPATSVAA 677
I S T L +T + +
Sbjct: 2302 TPITSSTALNTSTPITS 2318
Score = 32.3 bits (72), Expect = 6.1
Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 7/77 (9%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALV-------SNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSS 626
T +++ S P+ S +V S+ +N S P SST S+ +T ST++ +SS
Sbjct: 1465 TSSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVV---NSS 1521
Query: 627 NNILSFTLLGPATSVAA 677
I S T+L +T + +
Sbjct: 1522 TPITSSTVLNTSTPITS 1538
Score = 32.0 bits (71), Expect = 8.0
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALV-------SNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSS 626
T +++ S P+ S +V S+ +N S P SST S+ +T ST+L ++S
Sbjct: 1477 TSSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVL---NTS 1533
Query: 627 NNILSFTLLGPATSVAA 677
I S ++L +T + +
Sbjct: 1534 TPITSSSVLNSSTPITS 1550
Score = 32.0 bits (71), Expect = 8.0
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +3
Query: 468 TQPEIISGSLPLMRSALV-------SNVHINRS*PTISSTSSTESSSLTKSTIL*PPSSS 626
T +++ S P+ S +V S+ +N S P SST S+ +T ST+L ++S
Sbjct: 1165 TSSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVL---NTS 1221
Query: 627 NNILSFTLLGPATSVAA 677
I S ++L +T + +
Sbjct: 1222 TPITSSSVLNSSTPITS 1238
Score = 32.0 bits (71), Expect = 8.0
Identities = 23/78 (29%), Positives = 40/78 (50%)
Frame = +3
Query: 444 ISLKYSL*TQPEIISGSLPLMRSALVSNVHINRS*PTISSTSSTESSSLTKSTIL*PPSS 623
I+ +L T I S S+ + + S+ +N S P SST+ S +T ST++ +S
Sbjct: 1608 ITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVV---NS 1664
Query: 624 SNNILSFTLLGPATSVAA 677
S I S T++ +T + +
Sbjct: 1665 STPITSSTVVNTSTPITS 1682
>dbj|BAC04860.1| unnamed protein product [Homo sapiens]
Length = 577
Score = 33.9 bits (76), Expect = 2.1
Identities = 40/140 (28%), Positives = 63/140 (44%), Gaps = 5/140 (3%)
Frame = +3
Query: 261 SITASDVLQQSLLNVSL*NSNQRPQT-SPFIPATLLLPPSEYQQI---SHLVQYPLGRRT 428
S + V + L+ S S P T S ++P++ P + + S V P+ T
Sbjct: 253 SSATTPVSTTNQLSFSFSPSPSAPSTVSSYVPSSHSSPQTSSPSVGTSSSFVSAPVHSTT 312
Query: 429 LIIGVISLKYSL*TQPEIISGSL-PLMRSALVSNVHINRS*PTISSTSSTESSSLTKSTI 605
L G S SL T P S S PL S+ ++ I + P S+ T S+ L ST+
Sbjct: 313 LSSGSHS---SLSTHPTTASVSASPLFPSSPAASTTIRATLPHTISSPFTLSALLPISTV 369
Query: 606 L*PPSSSNNILSFTLLGPAT 665
P+ S+++ S T+ P+T
Sbjct: 370 TVSPTPSSHLASSTIAFPST 389
>ref|XP_030856.1| similar to KIAA1321 protein [Homo sapiens]
Length = 695
Score = 33.5 bits (75), Expect = 2.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 544 HNPQYLQLLPQNHHH*LNQQYYNLLHPLTIYYHSHYLDLQHQLQH 678
H+PQ Q P +HHH YY H ++H H+ LQH
Sbjct: 21 HHPQQQQQQPHHHHH-----YYFYNHSHNHHHHHHHQQPHQYLQH 60
>dbj|BAC03911.1| unnamed protein product [Homo sapiens]
Length = 325
Score = 33.5 bits (75), Expect = 2.7
Identities = 40/140 (28%), Positives = 63/140 (44%), Gaps = 5/140 (3%)
Frame = +3
Query: 261 SITASDVLQQSLLNVSL*NSNQRPQT-SPFIPATLLLPPSEYQQI---SHLVQYPLGRRT 428
S + V + L+ S S P T S ++P++ P + + S V P+ T
Sbjct: 84 SSATTPVSTTNQLSSSFSPSPSAPSTVSSYVPSSHSSPQTSSPSVGTSSSFVSAPVHSTT 143
Query: 429 LIIGVISLKYSL*TQPEIISGSL-PLMRSALVSNVHINRS*PTISSTSSTESSSLTKSTI 605
L G S SL T P S S PL S+ ++ I + P S+ T S+ L ST+
Sbjct: 144 LSSGSHS---SLSTHPTTASVSASPLFPSSPAASTTIRATLPHTISSPFTLSALLPISTV 200
Query: 606 L*PPSSSNNILSFTLLGPAT 665
P+ S+++ S T+ P+T
Sbjct: 201 TVSPTPSSHLASSTIAFPST 220
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,793,726
Number of Sequences: 1393205
Number of extensions: 12721706
Number of successful extensions: 36633
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 34160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36333
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
