Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000972A_C01 KMC000972A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] 160 9e-39
ref|NP_173030.1| hypothetical protein; protein id: At1g15780.1 [... 137 8e-32
dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro... 131 4e-30
gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 125 2e-28
pir||B86292 F7H2.12 protein - Arabidopsis thaliana gi|8927657|gb... 120 6e-27
>gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]
Length = 1405
Score = 160 bits (404), Expect = 9e-39
Identities = 84/126 (66%), Positives = 100/126 (78%), Gaps = 1/126 (0%)
Frame = +3
Query: 108 DAIGIDAFRVDINLMDNNNNWRPNQGA-EPNMDTSDWRGLLQPESRQRIVNKIMDTLKRH 284
+ IG +++ NLMD NN WRP E N+DT DWR LQP+SRQRIVNKIMDTLKRH
Sbjct: 5 EIIGAKSYK---NLMDTNN-WRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRH 60
Query: 285 LPVSGQEGLQELRKIAQRFEEKIFTAATSQSDYLRKISLKMLTMETKSQGTMXNNIQSNQ 464
LP SGQ+GL EL+KIA RFEEKI+TAA+SQSDYLRKISLKML+ME+KSQ M N++QSN
Sbjct: 61 LPFSGQDGLNELKKIAGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNSLQSNN 120
Query: 465 VGPSSK 482
G S++
Sbjct: 121 PGSSNR 126
>ref|NP_173030.1| hypothetical protein; protein id: At1g15780.1 [Arabidopsis
thaliana]
Length = 1335
Score = 137 bits (344), Expect = 8e-32
Identities = 71/118 (60%), Positives = 86/118 (72%), Gaps = 15/118 (12%)
Frame = +3
Query: 156 NNNNWRPN-QGAEPNMDTSDWRGLLQPESRQRIVNKIMDTLKRHLPVSGQEGLQELRKIA 332
+NNNWRP+ EP MDT DWR L P+SRQ+IVNKIM+TLK+HLP SG EG+ ELR+IA
Sbjct: 2 DNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIA 61
Query: 333 QRFEEKIFTAATSQSDYLRKISLKMLTMETKSQ--------------GTMXNNIQSNQ 464
RFEEKIF+ A +Q+DYLRKIS+KMLTMETKSQ GT ++I +NQ
Sbjct: 62 ARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPTNQ 119
>dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)]
Length = 1359
Score = 131 bits (329), Expect = 4e-30
Identities = 73/120 (60%), Positives = 83/120 (68%), Gaps = 14/120 (11%)
Frame = +3
Query: 165 NWRPNQGAEPN-------------MDTSDWRGLLQPESRQRIVNKIMDTLKRHLPVSGQE 305
NWRP QGA+P + DWR LQ E+R RIVNKIMDTLK+HLPVS E
Sbjct: 8 NWRPTQGADPAASGGIDPNAPAPALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPE 67
Query: 306 GLQELRKIAQRFEEKIFTAATSQSDYLRKISLKMLTMETKSQGTMXN-NIQSNQVGPSSK 482
GL EL+KIA RFEEKI+TAATSQSDYLRKISLKML+METK+Q N + NQ P S+
Sbjct: 68 GLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGSE 127
>gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata]
Length = 3148
Score = 125 bits (314), Expect = 2e-28
Identities = 62/84 (73%), Positives = 71/84 (83%)
Frame = +3
Query: 198 MDTSDWRGLLQPESRQRIVNKIMDTLKRHLPVSGQEGLQELRKIAQRFEEKIFTAATSQS 377
+D SDWR L +SRQRIVNKIMDTLKRHLP SG EGL EL++IA RFEEKIFT+ATSQS
Sbjct: 12 LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQS 71
Query: 378 DYLRKISLKMLTMETKSQGTMXNN 449
DYLRKISLKML+ME++SQ +N
Sbjct: 72 DYLRKISLKMLSMESRSQNASGSN 95
>pir||B86292 F7H2.12 protein - Arabidopsis thaliana
gi|8927657|gb|AAF82148.1|AC034256_12 EST gb|N38213 comes
from this gene. [Arabidopsis thaliana]
Length = 1366
Score = 120 bits (302), Expect = 6e-27
Identities = 71/149 (47%), Positives = 86/149 (57%), Gaps = 46/149 (30%)
Frame = +3
Query: 156 NNNNWRPN-QGAEPNMDTSDWRGLLQPESRQRIVNKIMDTLKRHLPVSGQEGLQELRKIA 332
+NNNWRP+ EP MDT DWR L P+SRQ+IVNKIM+TLK+HLP SG EG+ ELR+IA
Sbjct: 2 DNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIA 61
Query: 333 QRFEEKIFTAATSQ-------------------------------SDYLRKISLKMLTME 419
RFEEKIF+ A +Q +DYLRKIS+KMLTME
Sbjct: 62 ARFEEKIFSGALNQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTME 121
Query: 420 TKSQ--------------GTMXNNIQSNQ 464
TKSQ GT ++I +NQ
Sbjct: 122 TKSQNAAGSSAAIPAANNGTSIDSIPTNQ 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,042,863
Number of Sequences: 1393205
Number of extensions: 8655916
Number of successful extensions: 27075
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26993
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
