Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000970A_C01 KMC000970A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176736.1| unknown protein; protein id: At1g65580.1 [Arabi... 38 0.076
emb|CAB41466.1| inositol 1,4,5-trisphosphate 5-phosphatase [Arab... 38 0.076
gb|AAO42229.1| unknown protein [Arabidopsis thaliana] 38 0.076
gb|EAA23070.1| COME operon protein 3 [Fusobacterium nucleatum su... 32 4.2
gb|AAK38138.1|AC058781_15 L344.15R [Leishmania major] 32 7.1
>ref|NP_176736.1| unknown protein; protein id: At1g65580.1 [Arabidopsis thaliana]
gi|25404556|pir||G96680 F5I14.11 [imported] - Arabidopsis
thaliana gi|2190557|gb|AAB60921.1| F5I14.11 [Arabidopsis
thaliana]
Length = 993
Score = 38.1 bits (87), Expect = 0.076
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = -2
Query: 502 QGSALHRSDFQRFSSSLDVVDQLQKLKSP 416
Q +ALHRSD+ + S++LDVV+QL+ L SP
Sbjct: 965 QINALHRSDYHQLSNTLDVVEQLKNLHSP 993
>emb|CAB41466.1| inositol 1,4,5-trisphosphate 5-phosphatase [Arabidopsis thaliana]
Length = 1101
Score = 38.1 bits (87), Expect = 0.076
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = -2
Query: 502 QGSALHRSDFQRFSSSLDVVDQLQKLKSP 416
Q +ALHRSD+ + S++LDVV+QL+ L SP
Sbjct: 1073 QINALHRSDYHQLSNTLDVVEQLKNLHSP 1101
>gb|AAO42229.1| unknown protein [Arabidopsis thaliana]
Length = 1101
Score = 38.1 bits (87), Expect = 0.076
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = -2
Query: 502 QGSALHRSDFQRFSSSLDVVDQLQKLKSP 416
Q +ALHRSD+ + S++LDVV+QL+ L SP
Sbjct: 1073 QINALHRSDYHQLSNTLDVVEQLKNLHSP 1101
>gb|EAA23070.1| COME operon protein 3 [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 219
Score = 32.3 bits (72), Expect = 4.2
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = -2
Query: 352 MIGRWFW---NTHKVLFIHAVISILIMFVNFFP---HRELGVQLVIIKLIELYRESKYMA 191
++G+ F+ + K LFI A+ISILI ++ F G + II + R+ Y
Sbjct: 59 LLGKLFYEKIDLGKTLFISAIISILINPISIFSVSFQLSYGAMVAIIYIFPYVRKINYKK 118
Query: 190 KKM*RQLFLDYLIYSEMTPIYCVNDYVPY 104
K+ LDY++++ I+ + V Y
Sbjct: 119 FKI-----LDYILFTTTIQIFLIPITVYY 142
>gb|AAK38138.1|AC058781_15 L344.15R [Leishmania major]
Length = 682
Score = 31.6 bits (70), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = +3
Query: 168 KSCLYIFFAMYLLSLYSSISLMITSWTP 251
K CLY+FF + L L SL++++W P
Sbjct: 411 KKCLYLFFPSFPLLLSDECSLVLSAWPP 438
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,394,103
Number of Sequences: 1393205
Number of extensions: 9745097
Number of successful extensions: 21990
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21987
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
