Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000969A_C01 KMC000969A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_283692.1| hypothetical protein XP_283692 [Mus musculus] g... 39 0.065
ref|XP_287196.1| hypothetical protein XP_287196 [Mus musculus] 37 0.14
dbj|BAC39198.1| unnamed protein product [Mus musculus] 37 0.19
gb|EAA21939.1| hypothetical protein [Plasmodium yoelii yoelii] 36 0.42
gb|EAA14708.1| ebiP5249 [Anopheles gambiae str. PEST] 36 0.42
>ref|XP_283692.1| hypothetical protein XP_283692 [Mus musculus]
gi|26331786|dbj|BAC29623.1| unnamed protein product [Mus
musculus]
Length = 122
Score = 38.5 bits (88), Expect = 0.065
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = -3
Query: 176 VSLLSSFLFFSFSCHSFYFFFFAFL---YISLFVGILFAVYL 60
VSL SFLFFSF SF FF F FL ++S F LF +L
Sbjct: 6 VSLFFSFLFFSFLFFSFLFFSFPFLSFPFLSFFFSFLFFSFL 47
>ref|XP_287196.1| hypothetical protein XP_287196 [Mus musculus]
Length = 113
Score = 37.4 bits (85), Expect = 0.14
Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Frame = -1
Query: 169 CCLPFFSFLFLAILFIFSFLP---FYIYPSLWEFFLQFICS 56
C PFFSF F ++ F SF F+ PS FFL F S
Sbjct: 34 CFFPFFSFFFSSLFFFLSFFSSFLFFFLPSFLPFFLSFFLS 74
>dbj|BAC39198.1| unnamed protein product [Mus musculus]
Length = 124
Score = 37.0 bits (84), Expect = 0.19
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -3
Query: 179 LVSLLSSFLFFSFSCHSFYFFFFAFLYISLFVGILFAVYL 60
L S SF FFSF YF FF FL +SLF+ + +L
Sbjct: 59 LPSFFPSFTFFSFIFSFLYFLFFFFLSLSLFLSFFLSFFL 98
>gb|EAA21939.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 85
Score = 35.8 bits (81), Expect = 0.42
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +2
Query: 104 KRQKRKNKKNGKKKKRKERKTTGTPTPNDL 193
K++K+KNKK KKKK+K+ K T ND+
Sbjct: 55 KKKKKKNKKKNKKKKKKKNKKIEMATDNDI 84
>gb|EAA14708.1| ebiP5249 [Anopheles gambiae str. PEST]
Length = 1217
Score = 35.8 bits (81), Expect = 0.42
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 206 LTRPKDSKPLLTSISLPLFSPLLITIFL*HLNYDHHHHHH 325
L RP DS PL +++ LP + L I + + HHHHHH
Sbjct: 430 LDRPLDSHPLESNVELPPPALLKRKIIIKNKKKHHHHHHH 469
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,115,456
Number of Sequences: 1393205
Number of extensions: 12033260
Number of successful extensions: 85469
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 53646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75021
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
