Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000966A_C01 KMC000966A_c01
(732 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK55438.1| sodium channel 2 [Sternopygus macrurus] 36 0.64
ref|NP_718381.1| DNA internalization-related competence protein ... 35 1.4
ref|NP_702231.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.2
ref|NP_659273.1| NADH dehydrogenase subunit 2 [Laminaria digitat... 33 4.1
gb|AAK55437.1| sodium channel 1 [Sternopygus macrurus] 33 4.1
>gb|AAK55438.1| sodium channel 2 [Sternopygus macrurus]
Length = 742
Score = 35.8 bits (81), Expect = 0.64
Identities = 23/87 (26%), Positives = 44/87 (50%)
Frame = -1
Query: 333 CSFVSSLVSQSLGLFWWSFLPQRCFYLELHV*LNNFGSFLLPLLLLANGPIYKISESSTV 154
C + ++Q LGL WW+ L + C+ + H + F +F++ ++LL++ I + V
Sbjct: 378 CEYCEVDITQGLGLVWWT-LRKTCYQIVEH---SWFETFIIFMILLSSIEDIYIEQRKVV 433
Query: 153 NVVFKYVVVGSRPC*LFFLVFLVSQFL 73
VV +Y +F +F++ FL
Sbjct: 434 KVVLEYADK------VFSYIFVLEMFL 454
>ref|NP_718381.1| DNA internalization-related competence protein ComEC/Rec2
[Shewanella oneidensis MR-1]
gi|24348890|gb|AAN55825.1|AE015719_7 DNA
internalization-related competence protein ComEC/Rec2
[Shewanella oneidensis MR-1]
Length = 769
Score = 34.7 bits (78), Expect = 1.4
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Frame = -2
Query: 320 HLLYLN--HLDYFGGLSCPNVVFIL----------NFMFSLIILAVSFYPCYY*LMGQYI 177
HL+ ++ HL C + +F+L N + +L++ S +Y + +
Sbjct: 215 HLVSISGLHLSVITAWICASALFLLTRLAPHPSRRNLVLALMLAGSS--ALFYSYLAGFA 272
Query: 176 KSPNRRLLM*FLSMLWLVLDPVDSSSW----FSLLVSFLHRPLACLTKLFFLHYSILFLF 9
R L+M L ML +L SS+W F+L V L PLACL+ F+L +S L +
Sbjct: 273 VPTQRALVMILLIMLLSLLRRY-SSAWDRLLFALFVVLLIDPLACLSAGFWLSFSALAII 331
Query: 8 V 6
+
Sbjct: 332 L 332
>ref|NP_702231.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497411|gb|AAN36955.1|AE014821_42 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1898
Score = 33.5 bits (75), Expect = 3.2
Identities = 22/62 (35%), Positives = 30/62 (47%)
Frame = +1
Query: 10 NRNNIL*CRKNNLVKHARGLCKKLTNKENQEEESTGSRTNHNILKNYINSRRFGDFIYWP 189
N NI + L+ + + KK K+ +E S S NHN+ NY N+ F IYWP
Sbjct: 1450 NEQNIYNKNEEILLTNDKENKKKKKLKQKKEHLSNDSMNNHNVDDNY-NNCNFIILIYWP 1508
Query: 190 IS 195
S
Sbjct: 1509 QS 1510
>ref|NP_659273.1| NADH dehydrogenase subunit 2 [Laminaria digitata]
gi|21425336|emb|CAC87969.1| NADH dehydrogenase subunit 2
[Laminaria digitata]
Length = 496
Score = 33.1 bits (74), Expect = 4.1
Identities = 36/132 (27%), Positives = 56/132 (42%)
Frame = -2
Query: 398 SDNLVSWCYDVTFLS*LFSAGSVALYHLLYLNHLDYFGGLSCPNVVFILNFMFSLIILAV 219
+DN+ +W + FL LF SV+ ++ Y VFI+ SL +L
Sbjct: 81 TDNIGTWSKLIVFLGLLFCV-SVSESYMFSARFRAY------EFFVFIIGIGLSLCLLIS 133
Query: 218 SFYPCYY*LMGQYIKSPNRRLLM*FLSMLWLVLDPVDSSSWFSLLVSFLHRPLACLTKLF 39
S Y L+ Y+ M FLS+++ VL +S+FS + L + +F
Sbjct: 134 S-----YDLLSIYLS-------MEFLSLIFYVLAAWKKNSYFSAEAGLKYFILGSVASIF 181
Query: 38 FLHYSILFLFVM 3
FL + L F M
Sbjct: 182 FLFGASLIYFAM 193
>gb|AAK55437.1| sodium channel 1 [Sternopygus macrurus]
Length = 718
Score = 33.1 bits (74), Expect = 4.1
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = -1
Query: 333 CSFVSSLVSQSLGLFWWSFLPQRCFYLELHV*LNNFGSFLLPLLLLANGPI 181
C + ++Q G FWW+F + CF + H N F +F++ ++LL++G +
Sbjct: 371 CPCLDVDITQGRGKFWWNF-RKTCFIIVEH---NYFETFIIFMILLSSGAL 417
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,951,715
Number of Sequences: 1393205
Number of extensions: 13281976
Number of successful extensions: 40442
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 38374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40410
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
