Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000965A_C01 KMC000965A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32032.1|AF439273_1 NADH-ubiquinone oxidoreductase [Retama ... 221 6e-57
ref|NP_568778.1| expressed protein; protein id: At5g52840.1, sup... 205 3e-52
ref|NP_680745.1| hypothetical protein; protein id: At4g28005.1 [... 96 4e-19
ref|NP_648409.1| CG6463-PA [Drosophila melanogaster] gi|17944515... 66 3e-10
gb|EAA11832.1| agCP5677 [Anopheles gambiae str. PEST] 61 1e-08
>gb|AAL32032.1|AF439273_1 NADH-ubiquinone oxidoreductase [Retama raetam]
Length = 153
Score = 221 bits (562), Expect = 6e-57
Identities = 105/125 (84%), Positives = 110/125 (88%)
Frame = -2
Query: 562 LTEIQKVPEDEGYRKAVESFTRHRLKACQEEEDWEAIENRLGCGQVEELIEEAQDELKLI 383
L EI+ VPEDEGYRKAVESFT HRLK CQEE+DWE IE +LGCGQVEELIEEAQDELKLI
Sbjct: 27 LNEIKAVPEDEGYRKAVESFTSHRLKVCQEEQDWEDIEKKLGCGQVEELIEEAQDELKLI 86
Query: 382 SHMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPHPLPKEFHDTLEALISKSGKDTPAV 203
S M EW PWGVPDDYECEVIENDAPVPKHVPLHRP PLP EFH TLE L S+SGKDTPAV
Sbjct: 87 SLMNEWKPWGVPDDYECEVIENDAPVPKHVPLHRPPPLPTEFHKTLETLQSQSGKDTPAV 146
Query: 202 SSSDS 188
SS +S
Sbjct: 147 SSGES 151
>ref|NP_568778.1| expressed protein; protein id: At5g52840.1, supported by cDNA:
gi_15809965, supported by cDNA: gi_18958051 [Arabidopsis
thaliana] gi|25090853|sp|Q9FLX7|NUFM_ARATH Probable
NADH-ubiquinone oxidoreductase 18 kDa subunit,
mitochondrial precursor (Complex I-18Kd) (CI-18Kd)
gi|10177098|dbj|BAB10432.1| gene_id:MXC20.6~unknown
protein [Arabidopsis thaliana]
gi|15809966|gb|AAL06910.1| AT5g52840/MXC20_6
[Arabidopsis thaliana] gi|18958052|gb|AAL79599.1|
AT5g52840/MXC20_6 [Arabidopsis thaliana]
Length = 169
Score = 205 bits (522), Expect = 3e-52
Identities = 96/128 (75%), Positives = 106/128 (82%)
Frame = -2
Query: 562 LTEIQKVPEDEGYRKAVESFTRHRLKACQEEEDWEAIENRLGCGQVEELIEEAQDELKLI 383
L EIQ VPEDEGYRKAVESFTR RL C+EEEDWE IE RLGCGQVEELIEEA+DEL LI
Sbjct: 41 LKEIQAVPEDEGYRKAVESFTRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLI 100
Query: 382 SHMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPHPLPKEFHDTLEALISKSGKDTPAV 203
MIEWDPWGVPDDYECEVIENDAP+PKHVP HRP PLP++F+ TLE LI++S + PA
Sbjct: 101 GKMIEWDPWGVPDDYECEVIENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAESKTEIPAA 160
Query: 202 SSSDSPSK 179
+ SD K
Sbjct: 161 TPSDPQLK 168
>ref|NP_680745.1| hypothetical protein; protein id: At4g28005.1 [Arabidopsis
thaliana]
Length = 115
Score = 95.5 bits (236), Expect = 4e-19
Identities = 53/104 (50%), Positives = 65/104 (61%)
Frame = -2
Query: 490 LKACQEEEDWEAIENRLGCGQVEELIEEAQDELKLISHMIEWDPWGVPDDYECEVIENDA 311
++ C EEEDW IE RL CG+VEELIEEA DEL L+ MI +I A
Sbjct: 21 VEVCPEEEDWGVIEKRLACGKVEELIEEASDELTLVGKMI--------GSLHPNLIL--A 70
Query: 310 PVPKHVPLHRPHPLPKEFHDTLEALISKSGKDTPAVSSSDSPSK 179
P+PKHVP HRP PLP+EF+ TL+A+ S+S + A SSSD K
Sbjct: 71 PIPKHVPHHRPGPLPEEFYRTLQAVNSESKTEITATSSSDPQLK 114
>ref|NP_648409.1| CG6463-PA [Drosophila melanogaster] gi|17944515|gb|AAL48146.1|
RH11203p [Drosophila melanogaster]
gi|23093699|gb|AAF50138.2| CG6463-PA [Drosophila
melanogaster]
Length = 124
Score = 66.2 bits (160), Expect = 3e-10
Identities = 29/69 (42%), Positives = 42/69 (60%)
Frame = -2
Query: 562 LTEIQKVPEDEGYRKAVESFTRHRLKACQEEEDWEAIENRLGCGQVEELIEEAQDELKLI 383
L + K+P+D YRK E + R + + +D A+E +GCGQVEELI +A++EL L
Sbjct: 32 LRAVSKMPQDASYRKYTEQLVKQRADSVAQHKDITALEKAVGCGQVEELIVQAENELILA 91
Query: 382 SHMIEWDPW 356
M+ W PW
Sbjct: 92 RKMLGWKPW 100
>gb|EAA11832.1| agCP5677 [Anopheles gambiae str. PEST]
Length = 144
Score = 60.8 bits (146), Expect = 1e-08
Identities = 27/69 (39%), Positives = 38/69 (54%)
Frame = -2
Query: 562 LTEIQKVPEDEGYRKAVESFTRHRLKACQEEEDWEAIENRLGCGQVEELIEEAQDELKLI 383
L + K+P+D YR+ E R K + IE ++ CGQVEELI +A++EL L
Sbjct: 53 LRAVSKMPQDAAYRRYTEQIVSERAKVVATTPNVREIEQKINCGQVEELIVQAENELTLA 112
Query: 382 SHMIEWDPW 356
M+ W PW
Sbjct: 113 RKMLGWKPW 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,086,741
Number of Sequences: 1393205
Number of extensions: 13861456
Number of successful extensions: 85359
Number of sequences better than 10.0: 448
Number of HSP's better than 10.0 without gapping: 55616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77549
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
