Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000963A_C01 KMC000963A_c01
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563866.1| expressed protein; protein id: At1g10310.1, sup... 54 1e-08
gb|AAM65520.1| unknown [Arabidopsis thaliana] 54 1e-08
ref|NP_195888.1| putative protein; protein id: At5g02680.1 [Arab... 35 0.83
ref|NP_350157.1| 3-ketoacyl-acyl carrier protein reductase [Clos... 31 1.8
ref|NP_485924.1| probable short-chain dehydrogenase [Nostoc sp. ... 34 1.9
>ref|NP_563866.1| expressed protein; protein id: At1g10310.1, supported by cDNA:
40058. [Arabidopsis thaliana] gi|25283116|pir||C86237
protein F14N23.19 [imported] - Arabidopsis thaliana
gi|4914333|gb|AAD32881.1|AC005489_19 F14N23.19
[Arabidopsis thaliana]
Length = 242
Score = 53.9 bits (128), Expect(2) = 1e-08
Identities = 25/35 (71%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Frame = -1
Query: 464 TINKNNNLWEVPVEDFDSVIDTNVK-ATNVLRHFI 363
TINKN+ +WEV EDFD+V+DTNVK NVLRHFI
Sbjct: 103 TINKNSKIWEVSAEDFDNVMDTNVKGVANVLRHFI 137
Score = 26.9 bits (58), Expect(2) = 1e-08
Identities = 11/16 (68%), Positives = 14/16 (86%)
Frame = -3
Query: 363 PLMLVNRQGVMVNMSS 316
PLML +QG++VNMSS
Sbjct: 138 PLMLPRKQGIIVNMSS 153
>gb|AAM65520.1| unknown [Arabidopsis thaliana]
Length = 240
Score = 53.9 bits (128), Expect(2) = 1e-08
Identities = 25/35 (71%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Frame = -1
Query: 464 TINKNNNLWEVPVEDFDSVIDTNVK-ATNVLRHFI 363
TINKN+ +WEV EDFD+V+DTNVK NVLRHFI
Sbjct: 101 TINKNSKIWEVSAEDFDNVMDTNVKGVANVLRHFI 135
Score = 26.9 bits (58), Expect(2) = 1e-08
Identities = 11/16 (68%), Positives = 14/16 (86%)
Frame = -3
Query: 363 PLMLVNRQGVMVNMSS 316
PLML +QG++VNMSS
Sbjct: 136 PLMLPRKQGIIVNMSS 151
>ref|NP_195888.1| putative protein; protein id: At5g02680.1 [Arabidopsis thaliana]
gi|11290058|pir||T48289 hypothetical protein T22P11.270
- Arabidopsis thaliana gi|7413657|emb|CAB86005.1|
putative protein [Arabidopsis thaliana]
Length = 163
Score = 35.0 bits (79), Expect = 0.83
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -1
Query: 464 TINKNNNLWEVPVEDFDSVI 405
TINKN +WEV EDFD+VI
Sbjct: 10 TINKNTKIWEVSAEDFDNVI 29
>ref|NP_350157.1| 3-ketoacyl-acyl carrier protein reductase [Clostridium
acetobutylicum] gi|25283197|pir||F97338 3-ketoacyl-acyl
carrier protein reductase [imported] - Clostridium
acetobutylicum gi|15026670|gb|AAK81497.1|AE007854_4
3-ketoacyl-acyl carrier protein reductase [Clostridium
acetobutylicum]
Length = 249
Score = 30.8 bits (68), Expect(2) = 1.8
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 461 INKNNNLWEVPVEDFDSVIDTNVK-ATNVLRH 369
I K+N L + EDFDSVI+ N+K A N ++H
Sbjct: 95 ITKDNLLLRMKEEDFDSVINVNLKGAFNCIKH 126
Score = 21.9 bits (45), Expect(2) = 1.8
Identities = 8/26 (30%), Positives = 16/26 (60%)
Frame = -3
Query: 390 SYQCVATLYPLMLVNRQGVMVNMSSV 313
++ C+ +ML + G ++N+SSV
Sbjct: 120 AFNCIKHTSRVMLKKKSGKIINISSV 145
>ref|NP_485924.1| probable short-chain dehydrogenase [Nostoc sp. PCC 7120]
gi|25532966|pir||AF2041 hypothetical protein all1884
[imported] - Nostoc sp. (strain PCC 7120)
gi|17130974|dbj|BAB73583.1| ORF_ID:all1884~probable
short-chain dehydrogenase [Nostoc sp. PCC 7120]
Length = 227
Score = 33.9 bits (76), Expect = 1.9
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 458 NKNNNLWEVPVEDFDSVIDTNVK-ATNVLRHFI 363
N+ LWEVP DF +ID N+K +++R+FI
Sbjct: 88 NQPAPLWEVPSTDFSQLIDINIKGVVHIIRYFI 120
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,493,744
Number of Sequences: 1393205
Number of extensions: 11365026
Number of successful extensions: 27316
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 26380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27308
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
