Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000962A_C01 KMC000962A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_778027.1| peptidyl-prolyl cis-trans isomerase D [Buchnera... 34 0.87
ref|NP_780830.1| hypothetical protein [Clostridium tetani E88] g... 32 3.3
gb|AAO51173.1| similar to Dictyostelium discoideum (Slime mold).... 32 5.6
ref|NP_113472.1| hypothetical protein [Guillardia theta] gi|2539... 31 7.3
ref|NP_702498.1| hypothetical protein [Plasmodium falciparum 3D7... 31 9.6
>ref|NP_778027.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola
(Baizongia pistaciae)] gi|27904299|gb|AAO27132.1|
peptidyl-prolyl cis-trans isomerase D [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
Length = 511
Score = 34.3 bits (77), Expect = 0.87
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = -1
Query: 456 ILITIKKINHILLPFTAYIYVK*IKINLSSINYKSNNSNINKI*FVDLI*KKRF---TTF 286
+LI I I+ IL F Y+ NLS K NN+ I++ F+ + F F
Sbjct: 15 LLIIIIFISLILTNFNNYLLE-----NLSEYEIKINNTEISREEFIQRYNLECFYNDKNF 69
Query: 285 NSVIITNKKNQSRFFSFYNIHLSQM 211
+ IITN KN YNI LS +
Sbjct: 70 KNDIITNPKNPKYISEIYNITLSNI 94
>ref|NP_780830.1| hypothetical protein [Clostridium tetani E88]
gi|28202321|gb|AAO34767.1| hypothetical protein
[Clostridium tetani E88]
Length = 510
Score = 32.3 bits (72), Expect = 3.3
Identities = 20/88 (22%), Positives = 40/88 (44%)
Frame = -1
Query: 450 ITIKKINHILLPFTAYIYVK*IKINLSSINYKSNNSNINKI*FVDLI*KKRFTTFNSVII 271
I KK+ +I L +++ K+N +I +N + INK+ +++F S ++
Sbjct: 10 INFKKVLYISLMLFTFLFNSNCKVNAETIKDVNNTNEINKVENTSDKKEEKFPLDKSTLL 69
Query: 270 TNKKNQSRFFSFYNIHLSQMN*NKFITN 187
+ + +S + YN + Q N N
Sbjct: 70 NSVEIKSNYNPIYNNRIVQFEVNSNYNN 97
>gb|AAO51173.1| similar to Dictyostelium discoideum (Slime mold). GrfA (Fragment)
Length = 1096
Score = 31.6 bits (70), Expect = 5.6
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 465 FNSILITIKKINHILLPFTAYIYVK*-IKINLSSINYKSNNSNINKI 328
FN +LI+ K I L+ + VK I++NL +I KSNN+N N I
Sbjct: 578 FNDVLISTKPITSGLVKKKVSLKVKESIRMNLVTIKSKSNNNNNNNI 624
>ref|NP_113472.1| hypothetical protein [Guillardia theta] gi|25396853|pir||C90110
hypothetical protein orf231 [imported] - Guillardia
theta nucleomorph gi|12580723|emb|CAC27041.1|
hypothetical protein [Guillardia theta]
Length = 231
Score = 31.2 bits (69), Expect = 7.3
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Frame = -1
Query: 441 KKINHILLP-FTAYIYVK*IKINLSSIN-------YKSNNSNINKI*FVDLI*KKRF--- 295
K N+I P + YI+ + N S N YKSNNS + + ++ I KK +
Sbjct: 62 KNENNIFRPNYLTYIFKQNYNFNYSKFNCKIFIKNYKSNNSILYFLKTINYIKKKCYFVK 121
Query: 294 TTFNSVIITNKKNQSRFFSF 235
F + + TN NQ FFS+
Sbjct: 122 ECFLNKLYTNYYNQKFFFSY 141
>ref|NP_702498.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497683|gb|AAN37222.1|AE014826_21 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 900
Score = 30.8 bits (68), Expect = 9.6
Identities = 30/103 (29%), Positives = 40/103 (38%)
Frame = -1
Query: 393 K*IKINLSSINYKSNNSNINKI*FVDLI*KKRFTTFNSVIITNKKNQSRFFSFYNIHLSQ 214
K I IN N +NN+ IN L K + FN + +K YN H +
Sbjct: 102 KKIIINKKKSNNNNNNNKINSFLIQSL---KNYNLFNIYLDKIRK--------YNCH-NN 149
Query: 213 MN*NKFITNPF*VKIFKYFIILFKIKGTKFNAKTYGHLLFKSK 85
+ K I N +K F Y+I L+ I HL K K
Sbjct: 150 NHIKKKIININSIKYFDYYIYLYNIDALLIYTTHKFHLFLKEK 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 334,488,740
Number of Sequences: 1393205
Number of extensions: 6161239
Number of successful extensions: 12170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12148
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
