Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000961A_C01 KMC000961A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB70751.1| respiratory burst oxidase homolog [Solanum tuber... 209 1e-53
gb|AAC39476.1| respiratory burst oxidase protein B [Arabidopsis ... 179 2e-44
pir||A86223 protein F7G19.4 [imported] - Arabidopsis thaliana gi... 179 2e-44
gb|AAO64136.1| putative respiratory burst oxidase protein B [Ara... 179 2e-44
ref|NP_172383.1| putative respiratory burst oxidase protein B; p... 179 2e-44
>dbj|BAB70751.1| respiratory burst oxidase homolog [Solanum tuberosum]
Length = 867
Score = 209 bits (533), Expect = 1e-53
Identities = 104/154 (67%), Positives = 127/154 (81%)
Frame = +3
Query: 90 KVDRYKSGATHSLQCFRVLTKNVVLEGWSEVEKRFDGLAIEGKLLKTRFNECIGMSELKD 269
K+DR KSGA +L+ + + KNV EGWSEVE RFD LA+ G L K+ F +CIGM E +
Sbjct: 103 KIDRSKSGAARALRGLQFMNKNVGTEGWSEVESRFDQLAVNGMLTKSLFGQCIGMKESSE 162
Query: 270 FACKLFDALARRRGITSASITKDELREIWEQITNQSFDSRVQTFFDLVDKNADGRINEEQ 449
FA +LFDALAR+R ITS ++TKDELRE WEQIT+ SFD+R+QTFFD+VDK+ADGRI +E+
Sbjct: 163 FAEELFDALARKRCITSPAVTKDELREFWEQITDTSFDARLQTFFDMVDKDADGRITQEE 222
Query: 450 VKEIISLSASSNKLSKIQERSGEYASLIMEELDP 551
VKEIISLSAS+NKLSKIQ+ S EYA+LIMEELDP
Sbjct: 223 VKEIISLSASANKLSKIQDNSDEYAALIMEELDP 256
>gb|AAC39476.1| respiratory burst oxidase protein B [Arabidopsis thaliana]
Length = 843
Score = 179 bits (455), Expect = 2e-44
Identities = 96/155 (61%), Positives = 116/155 (73%), Gaps = 2/155 (1%)
Frame = +3
Query: 90 KVDRYKS-GATHSLQCFRVLTKN-VVLEGWSEVEKRFDGLAIEGKLLKTRFNECIGMSEL 263
++DR KS GA +L+ R + KN V GW EV RFD LA+EGKL K++F CIGM E
Sbjct: 74 RLDRSKSFGAMFALRGLRFIAKNDAVGRGWDEVAMRFDKLAVEGKLPKSKFGHCIGMVES 133
Query: 264 KDFACKLFDALARRRGITSASITKDELREIWEQITNQSFDSRVQTFFDLVDKNADGRINE 443
+F +LF+AL RRRG TS+SITK EL E WEQIT SFD R+Q FFD+VDKN DGRI
Sbjct: 134 SEFVNELFEALVRRRGTTSSSITKTELFEFWEQITGNSFDDRLQIFFDMVDKNLDGRITG 193
Query: 444 EQVKEIISLSASSNKLSKIQERSGEYASLIMEELD 548
++VKEII+LSAS+NKLSKI+E EYA+LIMEELD
Sbjct: 194 DEVKEIIALSASANKLSKIKENVDEYAALIMEELD 228
>pir||A86223 protein F7G19.4 [imported] - Arabidopsis thaliana
gi|2342677|gb|AAB70399.1| F7G19.4 [Arabidopsis thaliana]
Length = 253
Score = 179 bits (455), Expect = 2e-44
Identities = 96/155 (61%), Positives = 116/155 (73%), Gaps = 2/155 (1%)
Frame = +3
Query: 90 KVDRYKS-GATHSLQCFRVLTKN-VVLEGWSEVEKRFDGLAIEGKLLKTRFNECIGMSEL 263
++DR KS GA +L+ R + KN V GW EV RFD LA+EGKL K++F CIGM E
Sbjct: 69 RLDRSKSFGAMFALRGLRFIAKNDAVGRGWDEVAMRFDKLAVEGKLPKSKFGHCIGMVES 128
Query: 264 KDFACKLFDALARRRGITSASITKDELREIWEQITNQSFDSRVQTFFDLVDKNADGRINE 443
+F +LF+AL RRRG TS+SITK EL E WEQIT SFD R+Q FFD+VDKN DGRI
Sbjct: 129 SEFVNELFEALVRRRGTTSSSITKTELFEFWEQITGNSFDDRLQIFFDMVDKNLDGRITG 188
Query: 444 EQVKEIISLSASSNKLSKIQERSGEYASLIMEELD 548
++VKEII+LSAS+NKLSKI+E EYA+LIMEELD
Sbjct: 189 DEVKEIIALSASANKLSKIKENVDEYAALIMEELD 223
>gb|AAO64136.1| putative respiratory burst oxidase protein B [Arabidopsis thaliana]
Length = 622
Score = 179 bits (455), Expect = 2e-44
Identities = 96/155 (61%), Positives = 116/155 (73%), Gaps = 2/155 (1%)
Frame = +3
Query: 90 KVDRYKS-GATHSLQCFRVLTKN-VVLEGWSEVEKRFDGLAIEGKLLKTRFNECIGMSEL 263
++DR KS GA +L+ R + KN V GW EV RFD LA+EGKL K++F CIGM E
Sbjct: 74 RLDRSKSFGAMFALRGLRFIAKNDAVGRGWDEVAMRFDKLAVEGKLPKSKFGHCIGMVES 133
Query: 264 KDFACKLFDALARRRGITSASITKDELREIWEQITNQSFDSRVQTFFDLVDKNADGRINE 443
+F +LF+AL RRRG TS+SITK EL E WEQIT SFD R+Q FFD+VDKN DGRI
Sbjct: 134 SEFVNELFEALVRRRGTTSSSITKTELFEFWEQITGNSFDDRLQIFFDMVDKNLDGRITG 193
Query: 444 EQVKEIISLSASSNKLSKIQERSGEYASLIMEELD 548
++VKEII+LSAS+NKLSKI+E EYA+LIMEELD
Sbjct: 194 DEVKEIIALSASANKLSKIKENVDEYAALIMEELD 228
>ref|NP_172383.1| putative respiratory burst oxidase protein B; protein id:
At1g09090.1 [Arabidopsis thaliana]
Length = 838
Score = 179 bits (455), Expect = 2e-44
Identities = 96/155 (61%), Positives = 116/155 (73%), Gaps = 2/155 (1%)
Frame = +3
Query: 90 KVDRYKS-GATHSLQCFRVLTKN-VVLEGWSEVEKRFDGLAIEGKLLKTRFNECIGMSEL 263
++DR KS GA +L+ R + KN V GW EV RFD LA+EGKL K++F CIGM E
Sbjct: 69 RLDRSKSFGAMFALRGLRFIAKNDAVGRGWDEVAMRFDKLAVEGKLPKSKFGHCIGMVES 128
Query: 264 KDFACKLFDALARRRGITSASITKDELREIWEQITNQSFDSRVQTFFDLVDKNADGRINE 443
+F +LF+AL RRRG TS+SITK EL E WEQIT SFD R+Q FFD+VDKN DGRI
Sbjct: 129 SEFVNELFEALVRRRGTTSSSITKTELFEFWEQITGNSFDDRLQIFFDMVDKNLDGRITG 188
Query: 444 EQVKEIISLSASSNKLSKIQERSGEYASLIMEELD 548
++VKEII+LSAS+NKLSKI+E EYA+LIMEELD
Sbjct: 189 DEVKEIIALSASANKLSKIKENVDEYAALIMEELD 223
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,330,496
Number of Sequences: 1393205
Number of extensions: 8572939
Number of successful extensions: 25954
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 24785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25910
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
