Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000956A_C01 KMC000956A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565749.1| expressed protein; protein id: At2g32700.1, sup... 159 2e-38
ref|NP_567896.1| putative protein; protein id: At4g32551.1, supp... 154 5e-37
gb|AAG32022.1|AF277458_1 LEUNIG [Arabidopsis thaliana] 154 5e-37
pir||T08588 hypothetical protein L23H3.30 - Arabidopsis thaliana... 154 5e-37
dbj|BAB84838.1| putative flower development regulator LEUNI prot... 100 2e-20
>ref|NP_565749.1| expressed protein; protein id: At2g32700.1, supported by cDNA:
gi_13605814 [Arabidopsis thaliana] gi|7486097|pir||T00798
hypothetical protein At2g32700 [imported] - Arabidopsis
thaliana gi|2914703|gb|AAC04493.1| expressed protein
[Arabidopsis thaliana]
gi|13605815|gb|AAK32893.1|AF367306_1 At2g32700/F24L7.16
[Arabidopsis thaliana] gi|25090107|gb|AAN72230.1|
At2g32700/F24L7.16 [Arabidopsis thaliana]
Length = 787
Score = 159 bits (403), Expect = 2e-38
Identities = 72/108 (66%), Positives = 91/108 (83%)
Frame = -3
Query: 546 VNSICWDVNGDFLASVSPNLVKIWSLTSGECIQELSSSGNQFYSCVFHPSYSTLLVIGGF 367
V+S+CW NG+ +ASVS + VK+WSL+SG+CI ELS+SGN+F+S VFHPSY LLVIGG+
Sbjct: 680 VHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGY 739
Query: 366 SSLELWNMADNKSMTISAHESVISALAQSPVTGMVASASHDNSVKLWK 223
++ELWN +NK MT++ HE VISALAQSP TG+VASASHD SVK+WK
Sbjct: 740 QAIELWNTMENKCMTVAGHECVISALAQSPSTGVVASASHDKSVKIWK 787
>ref|NP_567896.1| putative protein; protein id: At4g32551.1, supported by cDNA:
gi_11141604 [Arabidopsis thaliana]
Length = 931
Score = 154 bits (390), Expect = 5e-37
Identities = 70/111 (63%), Positives = 92/111 (82%), Gaps = 3/111 (2%)
Frame = -3
Query: 546 VNSICWDVNGDFLASVSPNLVKIWSL---TSGECIQELSSSGNQFYSCVFHPSYSTLLVI 376
+NS+CWD +GDFLASVS ++VK+W+L + GEC+ ELS +GN+F SCVFHP+Y +LLVI
Sbjct: 821 INSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVI 880
Query: 375 GGFSSLELWNMADNKSMTISAHESVISALAQSPVTGMVASASHDNSVKLWK 223
G + SLELWNM++NK+MT+ AHE +I++LA S TG+VASASHD VKLWK
Sbjct: 881 GCYQSLELWNMSENKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
Score = 32.7 bits (73), Expect = 3.0
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = -3
Query: 525 VNGDFLASV-SPNLVKIWSLTSGECIQELSSSGNQFYSCVFHPSYSTLLVIGGFSSLELW 349
+ D + S + N ++ WS+ +G C + Q F P L SS L
Sbjct: 747 IKDDLICSCDNDNEIRYWSINNGSCTRVYKGGSTQIR---FQPRVGKYLAA---SSANLV 800
Query: 348 NMADNKSMTI----SAHESVISALAQSPVTGMVASASHDNSVKLW 226
N+ D ++ I H + I+++ P +AS S D VK+W
Sbjct: 801 NVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSED-MVKVW 844
>gb|AAG32022.1|AF277458_1 LEUNIG [Arabidopsis thaliana]
Length = 931
Score = 154 bits (390), Expect = 5e-37
Identities = 70/111 (63%), Positives = 92/111 (82%), Gaps = 3/111 (2%)
Frame = -3
Query: 546 VNSICWDVNGDFLASVSPNLVKIWSL---TSGECIQELSSSGNQFYSCVFHPSYSTLLVI 376
+NS+CWD +GDFLASVS ++VK+W+L + GEC+ ELS +GN+F SCVFHP+Y +LLVI
Sbjct: 821 INSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVI 880
Query: 375 GGFSSLELWNMADNKSMTISAHESVISALAQSPVTGMVASASHDNSVKLWK 223
G + SLELWNM++NK+MT+ AHE +I++LA S TG+VASASHD VKLWK
Sbjct: 881 GCYQSLELWNMSENKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
Score = 32.7 bits (73), Expect = 3.0
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = -3
Query: 525 VNGDFLASV-SPNLVKIWSLTSGECIQELSSSGNQFYSCVFHPSYSTLLVIGGFSSLELW 349
+ D + S + N ++ WS+ +G C + Q F P L SS L
Sbjct: 747 IKDDLICSCDNDNEIRYWSINNGSCTRVYKGGSTQIR---FQPRVGKYLAA---SSANLV 800
Query: 348 NMADNKSMTI----SAHESVISALAQSPVTGMVASASHDNSVKLW 226
N+ D ++ I H + I+++ P +AS S D VK+W
Sbjct: 801 NVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSED-MVKVW 844
>pir||T08588 hypothetical protein L23H3.30 - Arabidopsis thaliana
gi|4914452|emb|CAB43692.1| putative protein [Arabidopsis
thaliana] gi|7270159|emb|CAB79972.1| putative protein
[Arabidopsis thaliana]
Length = 930
Score = 154 bits (390), Expect = 5e-37
Identities = 70/111 (63%), Positives = 92/111 (82%), Gaps = 3/111 (2%)
Frame = -3
Query: 546 VNSICWDVNGDFLASVSPNLVKIWSL---TSGECIQELSSSGNQFYSCVFHPSYSTLLVI 376
+NS+CWD +GDFLASVS ++VK+W+L + GEC+ ELS +GN+F SCVFHP+Y +LLVI
Sbjct: 820 INSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVI 879
Query: 375 GGFSSLELWNMADNKSMTISAHESVISALAQSPVTGMVASASHDNSVKLWK 223
G + SLELWNM++NK+MT+ AHE +I++LA S TG+VASASHD VKLWK
Sbjct: 880 GCYQSLELWNMSENKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 930
Score = 32.7 bits (73), Expect = 3.0
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = -3
Query: 525 VNGDFLASV-SPNLVKIWSLTSGECIQELSSSGNQFYSCVFHPSYSTLLVIGGFSSLELW 349
+ D + S + N ++ WS+ +G C + Q F P L SS L
Sbjct: 746 IKDDLICSCDNDNEIRYWSINNGSCTRVYKGGSTQIR---FQPRVGKYLAA---SSANLV 799
Query: 348 NMADNKSMTI----SAHESVISALAQSPVTGMVASASHDNSVKLW 226
N+ D ++ I H + I+++ P +AS S D VK+W
Sbjct: 800 NVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSED-MVKVW 843
>dbj|BAB84838.1| putative flower development regulator LEUNI protein [Oryza sativa
(japonica cultivar-group)] gi|20804798|dbj|BAB92482.1|
putative flower development regulator, LEUNI protein
[Oryza sativa (japonica cultivar-group)]
Length = 883
Score = 99.8 bits (247), Expect = 2e-20
Identities = 53/101 (52%), Positives = 69/101 (67%), Gaps = 4/101 (3%)
Frame = -3
Query: 546 VNSICWDVNGDFLASVSPNLVKIWSLT---SGECIQELSSSGNQFYSCVFHPSYSTLLVI 376
++S+CWD GD LASVS + V+IWS GE + ELS SGN+F SCVFHPSY LL
Sbjct: 779 IHSLCWDSTGDNLASVSEDSVRIWSFAPGHDGEFVNELSCSGNKFQSCVFHPSYPYLL-- 836
Query: 375 GGFSSLELWNMADNKSMTI-SAHESVISALAQSPVTGMVAS 256
SLELW++ + +MT+ SAH+ +++ALA S TG VAS
Sbjct: 837 ----SLELWDIREKNAMTVHSAHDGLVAALAASSATGKVAS 873
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,049,334
Number of Sequences: 1393205
Number of extensions: 8720479
Number of successful extensions: 27098
Number of sequences better than 10.0: 1102
Number of HSP's better than 10.0 without gapping: 22796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26136
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
