Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000953A_C01 KMC000953A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA22381.1| hypothetical protein [Plasmodium yoelii yoelii] 32 3.0
ref|NP_111683.1| Predicted secreted protein [Thermoplasma volcan... 32 3.0
gb|EAA15315.1| inorganic pyrophosphatase, putative [Plasmodium y... 32 5.0
ref|NP_571290.1| orthodenticle homolog 3 [Danio rerio] gi|302432... 32 5.0
>gb|EAA22381.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2475
Score = 32.3 bits (72), Expect = 3.0
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 76 ENKYXG*D*KSEMFLPRIFKKSKYSNHSSKTEYRISNYQNQNDKYYIN 219
+NKY + K+ +F+P KS + + +K EY+ + Y+N+++ Y N
Sbjct: 326 KNKYANENIKTNIFIPSNTSKSTHVENENKNEYK-NEYKNEHNNEYNN 372
>ref|NP_111683.1| Predicted secreted protein [Thermoplasma volcanium]
gi|14325427|dbj|BAB60331.1| unknown product
[Thermoplasma volcanium]
Length = 170
Score = 32.3 bits (72), Expect = 3.0
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +2
Query: 119 YPEYLKSQNTQIIPAKLSIGSQITKIKTTNTT*TGHLTPLASDNNSASFSWT 274
YP YL SQNT I ++ S T+NT ++PL NS+++SWT
Sbjct: 61 YPIYLVSQNTNYIYLNFTLNS------TSNTVYVYDISPL----NSSTYSWT 102
>gb|EAA15315.1| inorganic pyrophosphatase, putative [Plasmodium yoelii yoelii]
Length = 306
Score = 31.6 bits (70), Expect = 5.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 142 KYSNHSSKTEYRISNYQNQNDKY 210
KY+N ++T++ IS +QN NDKY
Sbjct: 8 KYNNQLNQTDFNISYFQNINDKY 30
>ref|NP_571290.1| orthodenticle homolog 3 [Danio rerio]
gi|3024327|sp|Q90267|OTX3_BRARE Homeobox protein OTX3
(ZOTX3) gi|1384127|dbj|BAA05160.1| otx homeoprotein
[Danio rerio]
Length = 338
Score = 31.6 bits (70), Expect = 5.0
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 65 LPAMKINTXVKTKKVRCFYPEYLKSQNTQIIPAKLSIGSQITKIKTTNTT*TGHLTPLAS 244
LP ++ K ++ +C + S N++I PAK ++ + +GH TP A
Sbjct: 77 LPESRVQVWFKNRRAKCRQQQQQSSTNSKIRPAKKKPSPSR---ESPGSESSGHFTPPAV 133
Query: 245 DNNSASFSWTGG 280
++S+S S + G
Sbjct: 134 SSSSSSSSSSSG 145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 368,402,259
Number of Sequences: 1393205
Number of extensions: 6863132
Number of successful extensions: 14510
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14504
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
