Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000951A_C01 KMC000951A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190388.1| putative protein; protein id: At3g48050.1 [Arab... 38 0.11
emb|CAC69851.1| hypothetical protein [Nicotiana tabacum] 33 2.0
ref|NP_190389.1| putative protein; protein id: At3g48060.1 [Arab... 33 2.6
gb|EAA11905.1| ebiP4537 [Anopheles gambiae str. PEST] 33 3.4
gb|AAH26761.1| similar to Dystrophia myotonica-containing WD rep... 32 5.8
>ref|NP_190388.1| putative protein; protein id: At3g48050.1 [Arabidopsis thaliana]
gi|7487129|pir||T06678 hypothetical protein T17F15.80 -
Arabidopsis thaliana gi|4678323|emb|CAB41134.1| putative
protein [Arabidopsis thaliana]
Length = 1613
Score = 37.7 bits (86), Expect = 0.11
Identities = 16/26 (61%), Positives = 18/26 (68%)
Frame = -2
Query: 582 GALKRKEPDGGWDGTDRFSYKHPSWQ 505
G LKRKEP+GGWDG Y+ SWQ
Sbjct: 1593 GVLKRKEPEGGWDG-----YRQSSWQ 1613
>emb|CAC69851.1| hypothetical protein [Nicotiana tabacum]
Length = 305
Score = 33.5 bits (75), Expect = 2.0
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -2
Query: 582 GALKRKEPDGGWDGTDRFSYKHPSW 508
G LKRKEP+GGWD ++ F +K SW
Sbjct: 282 GVLKRKEPEGGWD-SENFRFKQ-SW 304
>ref|NP_190389.1| putative protein; protein id: At3g48060.1 [Arabidopsis thaliana]
gi|7487128|pir||T06677 hypothetical protein T17F15.70 -
Arabidopsis thaliana gi|4678322|emb|CAB41133.1| putative
protein [Arabidopsis thaliana]
Length = 1611
Score = 33.1 bits (74), Expect = 2.6
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2
Query: 582 GALKRKEPDGGWDG 541
G LKRKEP+GGWDG
Sbjct: 1593 GVLKRKEPEGGWDG 1606
>gb|EAA11905.1| ebiP4537 [Anopheles gambiae str. PEST]
Length = 1015
Score = 32.7 bits (73), Expect = 3.4
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Frame = -3
Query: 401 EIEATNVPLR------FRVDQVIRGCMKSASTDC------LLKMSFFLCRYLTETAAGVI 258
+++A + PL FRV+ + G +K+ STDC LL M LC+ LT + ++
Sbjct: 397 KLDANSAPLTMMLKFVFRVESPLAGILKALSTDCSKVQDALLAM---LCQVLTGNSLDLV 453
Query: 257 LPPRIGEIGIKCLTVTFLQCN 195
L E K L+CN
Sbjct: 454 LSVASVEGKFKAFISGLLKCN 474
>gb|AAH26761.1| similar to Dystrophia myotonica-containing WD repeat [Mus musculus]
Length = 539
Score = 32.0 bits (71), Expect = 5.8
Identities = 25/78 (32%), Positives = 37/78 (47%)
Frame = +3
Query: 126 RASSLASSCIQSSPSKGSRMDGAVALQESHSQTLDANFSDSRWQYHTCCCFG*ISTQEKT 305
R++SL S + ++ SKGS MDGA+A S TL + D + ++H EK
Sbjct: 401 RSNSLPHSAVSNAASKGSVMDGAIASGVSKFATL--SLHDRKERHH-----------EKD 447
Query: 306 HLQEAICGSRFHTTSDHL 359
H + G +SD L
Sbjct: 448 HKRNHSMGHISSKSSDKL 465
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,551,739
Number of Sequences: 1393205
Number of extensions: 10651351
Number of successful extensions: 27012
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 26360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27003
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
