Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000947A_C01 KMC000947A_c01
(726 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC62624.1| rac GTPase activating protein 1 [Lotus japonicus] 91 2e-17
ref|NP_187756.1| putative rac GTPase activating protein; protein... 87 2e-16
ref|NP_197632.1| rac GTPase activating protein; protein id: At5g... 86 4e-16
gb|AAC62625.1| rac GTPase activating protein 2 [Lotus japonicus] 84 3e-15
dbj|BAC05631.1| putative rac GTPase activating protein [Oryza sa... 82 1e-14
>gb|AAC62624.1| rac GTPase activating protein 1 [Lotus japonicus]
Length = 493
Score = 90.5 bits (223), Expect = 2e-17
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = -1
Query: 558 TMFGVSTESMQLSYDTRGNSVPTILLQMQRHLYAQGGLQAEGIFRINTDNTHTE 397
++FGVSTESMQLS+D RGNSVPTILL MQRHLYA+GGLQAEGIFRIN +N+ E
Sbjct: 138 SVFGVSTESMQLSFDARGNSVPTILLLMQRHLYARGGLQAEGIFRINAENSQEE 191
Score = 56.2 bits (134), Expect = 4e-07
Identities = 29/71 (40%), Positives = 43/71 (59%)
Frame = -1
Query: 402 TEASLLDWAINLMVDVVQEEHLSRMNAHNIAMVLVNSVSPGIVGRKMHTYTVLVLFIFVI 223
TEA+LLDWAINLM DV Q EH ++MNA NIAMV +++ H L ++ +
Sbjct: 254 TEAALLDWAINLMADVAQMEHFNKMNARNIAMVFAPNMT--------HMADPLTALMYAV 305
Query: 222 RLQIIVKILLM 190
++ +K L++
Sbjct: 306 QVMNFLKTLVV 316
>ref|NP_187756.1| putative rac GTPase activating protein; protein id: At3g11490.1
[Arabidopsis thaliana]
gi|12322911|gb|AAG51449.1|AC008153_22 putative rac
GTPase activating protein; 62102-60058 [Arabidopsis
thaliana]
Length = 435
Score = 87.0 bits (214), Expect = 2e-16
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = -1
Query: 561 ATMFGVSTESMQLSYDTRGNSVPTILLQMQRHLYAQGGLQAEGIFRINTDNTHTE 397
AT+FGVSTESMQLSYDTRGN VPTILL MQ HLY++GGL+ EGIFRIN +N E
Sbjct: 133 ATVFGVSTESMQLSYDTRGNIVPTILLMMQSHLYSRGGLRVEGIFRINGENGQEE 187
Score = 55.1 bits (131), Expect = 1e-06
Identities = 26/39 (66%), Positives = 32/39 (81%)
Frame = -1
Query: 402 TEASLLDWAINLMVDVVQEEHLSRMNAHNIAMVLVNSVS 286
TEASLLDWAINLM DVV+ E L++MNA NIAMV +++
Sbjct: 250 TEASLLDWAINLMADVVEMEQLNKMNARNIAMVFAPNMT 288
>ref|NP_197632.1| rac GTPase activating protein; protein id: At5g22400.1 [Arabidopsis
thaliana] gi|9757821|dbj|BAB08339.1| rac GTPase
activating protein [Arabidopsis thaliana]
Length = 466
Score = 86.3 bits (212), Expect = 4e-16
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = -1
Query: 561 ATMFGVSTESMQLSYDTRGNSVPTILLQMQRHLYAQGGLQAEGIFRINTDNTHTEA 394
AT+FGVSTESMQLSYD+RGN VPTILL MQ LY+QGGLQAEGIFR+ +N+ EA
Sbjct: 157 ATVFGVSTESMQLSYDSRGNCVPTILLLMQNCLYSQGGLQAEGIFRLTAENSEEEA 212
>gb|AAC62625.1| rac GTPase activating protein 2 [Lotus japonicus]
Length = 424
Score = 83.6 bits (205), Expect = 3e-15
Identities = 43/73 (58%), Positives = 50/73 (67%)
Frame = -1
Query: 615 LSQNAPHYLPTMKKLRHLATMFGVSTESMQLSYDTRGNSVPTILLQMQRHLYAQGGLQAE 436
L P +PT A +FGVS +SMQ SYD RGNSVPTILL MQ LY++GGL+AE
Sbjct: 79 LQPEVPQKVPTAS-----AKVFGVSAKSMQCSYDERGNSVPTILLMMQNRLYSEGGLKAE 133
Query: 435 GIFRINTDNTHTE 397
GIFRIN DN+ E
Sbjct: 134 GIFRINADNSQEE 146
>dbj|BAC05631.1| putative rac GTPase activating protein [Oryza sativa (japonica
cultivar-group)]
Length = 258
Score = 81.6 bits (200), Expect = 1e-14
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = -1
Query: 558 TMFGVSTESMQLSYDTRGNSVPTILLQMQRHLYAQGGLQAEGIFRINTDNTHTEA 394
T+FGVSTESMQ SYD RGNSVP+ILL MQR LY QGGL+AEGIFRI D+ +A
Sbjct: 68 TVFGVSTESMQCSYDARGNSVPSILLLMQRRLYEQGGLKAEGIFRIAADDAQEQA 122
Score = 42.4 bits (98), Expect = 0.007
Identities = 17/38 (44%), Positives = 28/38 (72%)
Frame = -1
Query: 399 EASLLDWAINLMVDVVQEEHLSRMNAHNIAMVLVNSVS 286
+A+LLDWA+ LM DV +EE ++M + N+AMV +++
Sbjct: 186 KAALLDWAVQLMADVAREERSNKMGSRNVAMVFAPNMT 223
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,515,499
Number of Sequences: 1393205
Number of extensions: 12737959
Number of successful extensions: 33609
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 31849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33594
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
