Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000945A_C01 KMC000945A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG51287.1|AC027035_10 helicase, putative [Arabidopsis thaliana] 46 2e-04
ref|NP_174605.1| RNA helicase, putative; protein id: At1g33390.1... 46 2e-04
ref|XP_144571.1| similar to kurz protein [Drosophila melanogaste... 35 0.62
pir||H88533 probable ATP-dependent RNA helicase C06E1.10 - Caeno... 33 1.4
ref|NP_498895.1| Helicase conserved C-terminal domain containing... 33 1.4
>gb|AAG51287.1|AC027035_10 helicase, putative [Arabidopsis thaliana]
Length = 1191
Score = 46.2 bits (108), Expect = 2e-04
Identities = 22/49 (44%), Positives = 28/49 (56%)
Frame = -1
Query: 498 LKSRLIDSSAMLRMXWKENPGELFSEILDWFQKSYHKDFKLLWLKMLTE 352
L + ID+ LR W++NP L+SEI WFQK + K LW ML E
Sbjct: 1137 LTEKKIDTLESLRKNWEQNPNVLYSEIEVWFQKKFRHRVKDLWQTMLKE 1185
>ref|NP_174605.1| RNA helicase, putative; protein id: At1g33390.1 [Arabidopsis
thaliana] gi|25403185|pir||E86457 probable RNA helicase,
27866-23496 [imported] - Arabidopsis thaliana
gi|12322388|gb|AAG51220.1|AC051630_17 RNA helicase,
putative; 27866-23496 [Arabidopsis thaliana]
Length = 1237
Score = 46.2 bits (108), Expect = 2e-04
Identities = 22/49 (44%), Positives = 28/49 (56%)
Frame = -1
Query: 498 LKSRLIDSSAMLRMXWKENPGELFSEILDWFQKSYHKDFKLLWLKMLTE 352
L + ID+ LR W++NP L+SEI WFQK + K LW ML E
Sbjct: 1183 LTEKKIDTLESLRKNWEQNPNVLYSEIEVWFQKKFRHRVKDLWQTMLKE 1231
>ref|XP_144571.1| similar to kurz protein [Drosophila melanogaster] [Mus musculus]
Length = 1163
Score = 34.7 bits (78), Expect = 0.62
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = -1
Query: 480 DSSAMLRMXWKENPGELFSEILDWFQKSYHKDFKLLW 370
DS L WK+NP L +E +W K+ H D + W
Sbjct: 1121 DSRDSLLAAWKKNPKYLLAEYCEWLPKAMHSDVEKNW 1157
>pir||H88533 probable ATP-dependent RNA helicase C06E1.10 - Caenorhabditis elegans
Length = 1152
Score = 33.5 bits (75), Expect = 1.4
Identities = 13/44 (29%), Positives = 23/44 (51%)
Frame = -1
Query: 501 KLKSRLIDSSAMLRMXWKENPGELFSEILDWFQKSYHKDFKLLW 370
KL + + + + L+ W +N L E L+W +S H+ L+W
Sbjct: 1091 KLIEKEVTTRSSLKEQWLKNENWLLEEYLEWVPESVHQQISLMW 1134
>ref|NP_498895.1| Helicase conserved C-terminal domain containing protein
[Caenorhabditis elegans] gi|21431859|sp|P34305|YKQ0_CAEEL
Putative ATP-dependent RNA helicase C06E1.10 in
chromosome III gi|16041605|gb|AAA27928.2| Hypothetical
protein C06E1.10 [Caenorhabditis elegans]
Length = 1148
Score = 33.5 bits (75), Expect = 1.4
Identities = 13/44 (29%), Positives = 23/44 (51%)
Frame = -1
Query: 501 KLKSRLIDSSAMLRMXWKENPGELFSEILDWFQKSYHKDFKLLW 370
KL + + + + L+ W +N L E L+W +S H+ L+W
Sbjct: 1087 KLIEKEVTTRSSLKEQWLKNENWLLEEYLEWVPESVHQQISLMW 1130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,206,861
Number of Sequences: 1393205
Number of extensions: 6984936
Number of successful extensions: 16975
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 16501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16974
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
