Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000944A_C01 KMC000944A_c01
(661 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF76357.1| myotubularin related protein, putative [Arabidops... 77 2e-13
ref|NP_187666.1| putative myotubularin; protein id: At3g10550.1 ... 77 2e-13
ref|NP_196074.1| myotubularin - like protein; protein id: At5g04... 65 6e-10
ref|NP_267821.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lact... 32 9.8
>gb|AAF76357.1| myotubularin related protein, putative [Arabidopsis thaliana]
Length = 840
Score = 77.0 bits (188), Expect = 2e-13
Identities = 35/54 (64%), Positives = 40/54 (73%)
Frame = -3
Query: 638 NSIGRICETLCXFRAGEGGCRWPEGECAQLCSQFVGVKANFDALDQLSIDDSYF 477
N GR+CE LC R EG CRWPE CA + SQFVG+KANFDA D+L+I DSYF
Sbjct: 784 NPKGRVCEALCPLRTREGVCRWPEVGCAHVGSQFVGLKANFDAFDRLAIYDSYF 837
>ref|NP_187666.1| putative myotubularin; protein id: At3g10550.1 [Arabidopsis
thaliana] gi|12322799|gb|AAG51396.1|AC011560_28 putative
myotubularin; 50488-54147 [Arabidopsis thaliana]
Length = 609
Score = 77.0 bits (188), Expect = 2e-13
Identities = 35/54 (64%), Positives = 40/54 (73%)
Frame = -3
Query: 638 NSIGRICETLCXFRAGEGGCRWPEGECAQLCSQFVGVKANFDALDQLSIDDSYF 477
N GR+CE LC R EG CRWPE CA + SQFVG+KANFDA D+L+I DSYF
Sbjct: 553 NPKGRVCEALCPLRTREGVCRWPEVGCAHVGSQFVGLKANFDAFDRLAIYDSYF 606
>ref|NP_196074.1| myotubularin - like protein; protein id: At5g04540.1 [Arabidopsis
thaliana] gi|11358568|pir||T48451 myotubularin-like
protein - Arabidopsis thaliana
gi|7406459|emb|CAB85561.1| myotubularin-like protein
[Arabidopsis thaliana]
Length = 799
Score = 65.5 bits (158), Expect = 6e-10
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = -3
Query: 623 ICETLCXFRAGEGGCRWPEGECAQLCSQFVGVKANFDALDQLSIDDSYFN*E 468
+CE +C R EG CRWP+ CA++ +QF+G+K NF+A D L + DSYF E
Sbjct: 748 VCEAVCPLRTREGTCRWPDAGCARIGNQFLGLKTNFEAFDNLCVYDSYFTAE 799
>ref|NP_267821.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis]
gi|25401829|pir||A86833 hypothetical protein yrbE
[imported] - Lactococcus lactis subsp. lactis (strain
IL1403) gi|12724678|gb|AAK05763.1|AE006397_3 UNKNOWN
PROTEIN [Lactococcus lactis subsp. lactis]
Length = 77
Score = 31.6 bits (70), Expect = 9.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 17 LIVFINILSNDYWWTAIPKKCQKYKNLIICTKLIL 121
+++FI L Y W IPK KY+ L++ LI+
Sbjct: 8 VMIFIGFLLQIYVWPRIPKSIFKYRGLVLSISLII 42
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,217,932
Number of Sequences: 1393205
Number of extensions: 12119859
Number of successful extensions: 23793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23783
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
