Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000942A_C01 KMC000942A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC55706.1| P0453E05.22 [Oryza sativa (japonica cultivar-gro... 142 7e-37
ref|NP_568564.1| expressed protein; protein id: At5g39410.1, sup... 139 2e-32
gb|AAM60851.1| unknown [Arabidopsis thaliana] 139 2e-32
ref|NP_057086.1| CGI-49 protein [Homo sapiens] gi|4929567|gb|AAD... 84 8e-16
dbj|BAC11453.1| unnamed protein product [Homo sapiens] 84 8e-16
>dbj|BAC55706.1| P0453E05.22 [Oryza sativa (japonica cultivar-group)]
Length = 456
Score = 142 bits (357), Expect(2) = 7e-37
Identities = 63/89 (70%), Positives = 77/89 (85%)
Frame = -3
Query: 534 FKKNGPSQEEVEKASFKMWFVGRGFSNVSLASQGNSKPDMEIVTRVTGPEIGYIATPIIL 355
F+K+GP++E+V ASFKMWFVGRG+S+ + AS SKPD EI+TRV+GPEIGYI TPI+L
Sbjct: 347 FRKSGPTEEQVSSASFKMWFVGRGYSDAARASDRGSKPDKEIITRVSGPEIGYITTPIVL 406
Query: 354 IQCALILLSQRRNLPKGGVYPPGIIFGPT 268
+QCAL+LLSQR NLPKGGVY PG +FGPT
Sbjct: 407 VQCALVLLSQRGNLPKGGVYTPGAVFGPT 435
Score = 33.5 bits (75), Expect(2) = 7e-37
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = -1
Query: 266 DLQERLQQNGISFDMISKTTI 204
D+Q+RLQ+NG+SFD++S T+
Sbjct: 436 DIQQRLQENGLSFDLVSTRTL 456
>ref|NP_568564.1| expressed protein; protein id: At5g39410.1, supported by cDNA:
101366., supported by cDNA: gi_4099091 [Arabidopsis
thaliana] gi|4099092|gb|AAD09232.1| unknown [Arabidopsis
thaliana] gi|10177688|dbj|BAB11014.1|
gb|AAD09232.1~gene_id:MUL8.9~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 454
Score = 139 bits (351), Expect = 2e-32
Identities = 62/89 (69%), Positives = 76/89 (84%)
Frame = -3
Query: 534 FKKNGPSQEEVEKASFKMWFVGRGFSNVSLASQGNSKPDMEIVTRVTGPEIGYIATPIIL 355
F+K GPS+EEVE A+FKMWF+GRG+S SLASQG +KPD+EI+TR++GPEIGYI TPI L
Sbjct: 343 FQKKGPSEEEVESATFKMWFIGRGYSEESLASQGETKPDLEIITRISGPEIGYITTPITL 402
Query: 354 IQCALILLSQRRNLPKGGVYPPGIIFGPT 268
+QC LI+L QR +L KGGVY PGI+FG T
Sbjct: 403 VQCGLIVLGQRESLVKGGVYTPGIVFGST 431
Score = 33.5 bits (75), Expect = 1.7
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = -1
Query: 311 QKEEFTLQGLYS-----AQPDLQERLQQNGISFDMISK 213
Q+E G+Y+ D+Q+RL+ NGISF++ISK
Sbjct: 412 QRESLVKGGVYTPGIVFGSTDIQQRLEDNGISFELISK 449
>gb|AAM60851.1| unknown [Arabidopsis thaliana]
Length = 453
Score = 139 bits (350), Expect = 2e-32
Identities = 62/89 (69%), Positives = 76/89 (84%)
Frame = -3
Query: 534 FKKNGPSQEEVEKASFKMWFVGRGFSNVSLASQGNSKPDMEIVTRVTGPEIGYIATPIIL 355
F+K GPS+EEVE A+FKMWF+GRG+S SLASQG +KPD+EI+TR++GPEIGYI TPI L
Sbjct: 342 FQKKGPSEEEVESATFKMWFIGRGYSEESLASQGETKPDLEIITRISGPEIGYITTPITL 401
Query: 354 IQCALILLSQRRNLPKGGVYPPGIIFGPT 268
+QC LI+L QR +L KGGVY PGI+FG T
Sbjct: 402 LQCGLIVLGQRESLVKGGVYTPGIVFGST 430
Score = 33.5 bits (75), Expect = 1.7
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = -1
Query: 311 QKEEFTLQGLYS-----AQPDLQERLQQNGISFDMISK 213
Q+E G+Y+ D+Q+RL+ NGISF++ISK
Sbjct: 411 QRESLVKGGVYTPGIVFGSTDIQQRLEDNGISFELISK 448
>ref|NP_057086.1| CGI-49 protein [Homo sapiens] gi|4929567|gb|AAD34044.1|AF151807_1
CGI-49 protein [Homo sapiens]
Length = 428
Score = 84.3 bits (207), Expect = 8e-16
Identities = 41/90 (45%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Frame = -3
Query: 534 FKKNGPSQEEVEKASFKMWFVGRGFSNVSLASQGNSKPDMEIVTRVTGPEIGYIATPIIL 355
F K GP+Q++++ ASF + F G+G+S + +KP+++I T+V GPE GY+ATPI +
Sbjct: 320 FSKQGPTQKQIDAASFTLTFFGQGYSQGT--GTDKNKPNIKICTQVKGPEAGYVATPIAM 377
Query: 354 IQCALILLSQRRNLPK-GGVYPPGIIFGPT 268
+Q A+ LLS +LPK GGV+ PG F T
Sbjct: 378 VQAAMTLLSDASHLPKAGGVFTPGAAFSKT 407
>dbj|BAC11453.1| unnamed protein product [Homo sapiens]
Length = 429
Score = 84.3 bits (207), Expect = 8e-16
Identities = 41/90 (45%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Frame = -3
Query: 534 FKKNGPSQEEVEKASFKMWFVGRGFSNVSLASQGNSKPDMEIVTRVTGPEIGYIATPIIL 355
F K GP+Q++++ ASF + F G+G+S + +KP+++I T+V GPE GY+ATPI +
Sbjct: 321 FSKQGPTQKQIDAASFTLTFFGQGYSQGT--GTDKNKPNIKICTQVKGPEAGYVATPIAM 378
Query: 354 IQCALILLSQRRNLPK-GGVYPPGIIFGPT 268
+Q A+ LLS +LPK GGV+ PG F T
Sbjct: 379 VQAAMTLLSDASHLPKAGGVFTPGAAFSKT 408
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,381,019
Number of Sequences: 1393205
Number of extensions: 9616783
Number of successful extensions: 21381
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 20728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21348
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
