Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000939A_C01 KMC000939A_c01
(1365 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN72009.1| Unknown protein [Arabidopsis thaliana] 219 1e-55
gb|AAG51444.1|AC008153_17 unknown protein; 82436-88041 [Arabidop... 219 1e-55
dbj|BAB09687.1| gb|AAF00669.1~gene_id:MBL20.10~strong similarity... 218 2e-55
ref|NP_196240.1| putative protein; protein id: At5g06220.1 [Arab... 215 2e-54
ref|NP_187764.1| hypothetical protein; protein id: At3g11570.1 [... 166 1e-39
>gb|AAN72009.1| Unknown protein [Arabidopsis thaliana]
Length = 872
Score = 219 bits (557), Expect = 1e-55
Identities = 111/178 (62%), Positives = 144/178 (80%)
Frame = -2
Query: 1364 LRNELLELEKRVQRSANQSQSNEDLMVSDDSGRYNNDARGVQIVRVQKKESMLQKSLDKL 1185
LRNEL+ELEKRV+RS +QS E+L +S+D+ + ++ VQ+V+ KKE+M++K+L KL
Sbjct: 694 LRNELIELEKRVKRSTDQSVDEEEL-ISEDTPQSSSRTESVQLVQTPKKENMMEKTLQKL 752
Query: 1184 KETGTDVWQGTQLLAIDVGAATGFVRRALIGDELTEKEXKTLKRTLTDMASVVPIGVLML 1005
+E TDVWQGTQLLAID AA +RR+LIGDELT KE K L+RT+TD+ASV+PIG+LML
Sbjct: 753 REATTDVWQGTQLLAIDSAAAVQLLRRSLIGDELTGKEKKALRRTMTDLASVIPIGILML 812
Query: 1004 LPVTAVGHAAMLAAIQRYVPALIPSTYAPERLDLLRQLEKMKQMTASDMNAEEEGDEV 831
LPVTAVGHAAMLA IQRYVP LIPSTY ERL+LLRQLEK+K++ ++ +EE +E+
Sbjct: 813 LPVTAVGHAAMLAGIQRYVPGLIPSTYGSERLNLLRQLEKIKELQTNETESEEGVEEI 870
>gb|AAG51444.1|AC008153_17 unknown protein; 82436-88041 [Arabidopsis thaliana]
Length = 797
Score = 219 bits (557), Expect = 1e-55
Identities = 111/178 (62%), Positives = 144/178 (80%)
Frame = -2
Query: 1364 LRNELLELEKRVQRSANQSQSNEDLMVSDDSGRYNNDARGVQIVRVQKKESMLQKSLDKL 1185
LRNEL+ELEKRV+RS +QS E+L +S+D+ + ++ VQ+V+ KKE+M++K+L KL
Sbjct: 619 LRNELIELEKRVKRSTDQSVDEEEL-ISEDTPQSSSRTESVQLVQTPKKENMMEKTLQKL 677
Query: 1184 KETGTDVWQGTQLLAIDVGAATGFVRRALIGDELTEKEXKTLKRTLTDMASVVPIGVLML 1005
+E TDVWQGTQLLAID AA +RR+LIGDELT KE K L+RT+TD+ASV+PIG+LML
Sbjct: 678 REATTDVWQGTQLLAIDSAAAVQLLRRSLIGDELTGKEKKALRRTMTDLASVIPIGILML 737
Query: 1004 LPVTAVGHAAMLAAIQRYVPALIPSTYAPERLDLLRQLEKMKQMTASDMNAEEEGDEV 831
LPVTAVGHAAMLA IQRYVP LIPSTY ERL+LLRQLEK+K++ ++ +EE +E+
Sbjct: 738 LPVTAVGHAAMLAGIQRYVPGLIPSTYGSERLNLLRQLEKIKELQTNETESEEGVEEI 795
>dbj|BAB09687.1| gb|AAF00669.1~gene_id:MBL20.10~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 806
Score = 218 bits (554), Expect = 2e-55
Identities = 113/177 (63%), Positives = 142/177 (79%)
Frame = -2
Query: 1364 LRNELLELEKRVQRSANQSQSNEDLMVSDDSGRYNNDARGVQIVRVQKKESMLQKSLDKL 1185
LRNEL+ELEKRVQ S ++S S + S+D + ++ +GVQ+V+ KKE++++K+LD+L
Sbjct: 628 LRNELIELEKRVQGSTDESVSKQG-RTSEDLPKSSSSTKGVQLVQSSKKENVIEKTLDQL 686
Query: 1184 KETGTDVWQGTQLLAIDVGAATGFVRRALIGDELTEKEXKTLKRTLTDMASVVPIGVLML 1005
K+ TDVWQGTQLLA D AA +RR+++GDELTEKE K L+RT+TD+ASVVPIGVLML
Sbjct: 687 KDATTDVWQGTQLLAFDSAAAMELLRRSVVGDELTEKEKKALRRTMTDLASVVPIGVLML 746
Query: 1004 LPVTAVGHAAMLAAIQRYVPALIPSTYAPERLDLLRQLEKMKQMTASDMNAEEEGDE 834
LPVTAVGHAAMLAAIQRYVP LIPSTY ERL+LLRQLEK+KQM ++ EE DE
Sbjct: 747 LPVTAVGHAAMLAAIQRYVPGLIPSTYGAERLNLLRQLEKVKQMQTNETEPEEGIDE 803
>ref|NP_196240.1| putative protein; protein id: At5g06220.1 [Arabidopsis thaliana]
Length = 813
Score = 215 bits (547), Expect = 2e-54
Identities = 115/178 (64%), Positives = 142/178 (79%), Gaps = 1/178 (0%)
Frame = -2
Query: 1364 LRNELLELEKRVQRSANQS-QSNEDLMVSDDSGRYNNDARGVQIVRVQKKESMLQKSLDK 1188
LRNEL+ELEKRVQ S ++S +++EDL S S +GVQ+V+ KKE++++K+LD+
Sbjct: 639 LRNELIELEKRVQGSTDESGRTSEDLPKSSSS------TKGVQLVQSSKKENVIEKTLDQ 692
Query: 1187 LKETGTDVWQGTQLLAIDVGAATGFVRRALIGDELTEKEXKTLKRTLTDMASVVPIGVLM 1008
LK+ TDVWQGTQLLA D AA +RR+++GDELTEKE K L+RT+TD+ASVVPIGVLM
Sbjct: 693 LKDATTDVWQGTQLLAFDSAAAMELLRRSVVGDELTEKEKKALRRTMTDLASVVPIGVLM 752
Query: 1007 LLPVTAVGHAAMLAAIQRYVPALIPSTYAPERLDLLRQLEKMKQMTASDMNAEEEGDE 834
LLPVTAVGHAAMLAAIQRYVP LIPSTY ERL+LLRQLEK+KQM ++ EE DE
Sbjct: 753 LLPVTAVGHAAMLAAIQRYVPGLIPSTYGAERLNLLRQLEKVKQMQTNETEPEEGIDE 810
>ref|NP_187764.1| hypothetical protein; protein id: At3g11570.1 [Arabidopsis
thaliana] gi|12322909|gb|AAG51447.1|AC008153_20
hypothetical protein; 89863-88075 [Arabidopsis thaliana]
Length = 427
Score = 166 bits (419), Expect = 1e-39
Identities = 71/108 (65%), Positives = 85/108 (77%)
Frame = +3
Query: 396 RNGTWNEGGECDMEKEPEKDHTKLATEPYYNTFISDVVEQMQYGSWKVHFLNITYLSELR 575
RNGTWN GG CD + EPE D K+ +P +N +IS +++M+Y KV FLNITYL+E R
Sbjct: 319 RNGTWNLGGLCDADTEPETDMKKMEPDPIHNNYISQAIQEMRYEHSKVKFLNITYLTEFR 378
Query: 576 KDGHPSKYREPGTPPDAPQDCSHWCLPGVPDTWNELLYAQLLSKKFGT 719
KD HPS+YREPGTP DAPQDCSHWCLPGVPDTWNE+LYAQLL+ + T
Sbjct: 379 KDAHPSRYREPGTPEDAPQDCSHWCLPGVPDTWNEILYAQLLAMNYRT 426
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,156,288,137
Number of Sequences: 1393205
Number of extensions: 27167284
Number of successful extensions: 67732
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 63011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67573
length of database: 448,689,247
effective HSP length: 127
effective length of database: 271,752,212
effective search space used: 88862973324
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
