Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000938A_C04 KMC000938A_c04
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704861.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.30
>ref|NP_704861.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505224|emb|CAD52004.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1342
Score = 36.2 bits (82), Expect = 0.30
Identities = 19/72 (26%), Positives = 34/72 (46%)
Frame = +3
Query: 3 FMFNK*NTYLNHYSKRLNLLRSHIQQFGLKISS*KGPAQNQMQV*ETVNLQ*YNINHRMQ 182
++FNK N Y N+ + +LN ++ N + + +N+ YN+N +
Sbjct: 395 YLFNKLNEYTNYINLKLNTSTNNFN------------TSNNNMINDELNICFYNMNSILM 442
Query: 183 TLHIFLNIFQQI 218
+H+FL IF I
Sbjct: 443 NMHVFLKIFYNI 454
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,086,337
Number of Sequences: 1393205
Number of extensions: 9155524
Number of successful extensions: 19070
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19067
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
