Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000935A_C01 KMC000935A_c01
(626 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_471284.1| highly similar to carbamoyl-phosphate synthetas... 32 5.2
dbj|BAB85563.1| KIAA1977 protein [Homo sapiens] 32 5.2
ref|XP_058800.3| similar to KIAA1977 protein [Homo sapiens] 32 5.2
ref|NP_760171.1| Signal transduction histidine kinase [Vibrio vu... 32 5.2
gb|ZP_00054733.1| hypothetical protein [Magnetospirillum magneto... 32 5.2
>ref|NP_471284.1| highly similar to carbamoyl-phosphate synthetase (glutaminase
subunit) [Listeria innocua]
gi|21759038|sp|Q92AH2|CARA_LISIN Carbamoyl-phosphate
synthase small chain (Carbamoyl-phosphate synthetase
glutamine chain) gi|25291400|pir||AD1676
carbamoyl-phosphate synthetase (glutaminase chain)
homolog pyrAa [imported] - Listeria innocua (strain
Clip11262) gi|16414451|emb|CAC97180.1| highly similar to
carbamoyl-phosphate synthetase (glutaminase subunit)
[Listeria innocua]
Length = 363
Score = 32.3 bits (72), Expect = 5.2
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = +1
Query: 469 NNYDFHQLLPNIREYIVREPAKYDDLWRNQ 558
N DF + P ++ +VRE A+Y WRNQ
Sbjct: 65 NRDDFESINPAVKGVVVREAAEYPSNWRNQ 94
>dbj|BAB85563.1| KIAA1977 protein [Homo sapiens]
Length = 606
Score = 32.3 bits (72), Expect = 5.2
Identities = 20/68 (29%), Positives = 34/68 (49%)
Frame = +1
Query: 343 HEIDLTYEMLNIGEKFQSRNHASITITGMSNQRNWLLLRRNCNNYDFHQLLPNIREYIVR 522
HEI + Y LN G K +R+H+ T ++ Q + + + Y P++ + + R
Sbjct: 131 HEIIVQY-FLNHGVKVDARDHSGATARMLAKQYGHMKIVALMDTYS-----PSLPKSLYR 184
Query: 523 EPAKYDDL 546
P KY+DL
Sbjct: 185 SPEKYEDL 192
>ref|XP_058800.3| similar to KIAA1977 protein [Homo sapiens]
Length = 583
Score = 32.3 bits (72), Expect = 5.2
Identities = 20/68 (29%), Positives = 34/68 (49%)
Frame = +1
Query: 343 HEIDLTYEMLNIGEKFQSRNHASITITGMSNQRNWLLLRRNCNNYDFHQLLPNIREYIVR 522
HEI + Y LN G K +R+H+ T ++ Q + + + Y P++ + + R
Sbjct: 108 HEIIVQY-FLNHGVKVDARDHSGATARMLAKQYGHMKIVALMDTYS-----PSLPKSLYR 161
Query: 523 EPAKYDDL 546
P KY+DL
Sbjct: 162 SPEKYEDL 169
>ref|NP_760171.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
gi|27360788|gb|AAO09698.1|AE016801_17 Signal transduction
histidine kinase [Vibrio vulnificus CMCP6]
Length = 1143
Score = 32.3 bits (72), Expect = 5.2
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -2
Query: 346 RVRS-QRAGLGLGCSRRLGKYLPSVVTMRARSERGAVFGIILD 221
+VRS Q GLGL S+ + + L ++MR+ RG+VF I LD
Sbjct: 961 QVRSDQGLGLGLAISKGIAQVLGHEISMRSWHGRGSVFSITLD 1003
>gb|ZP_00054733.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 1179
Score = 32.3 bits (72), Expect = 5.2
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -2
Query: 325 GLGLGCSRRLGKYLPSVVTMRARSERGAVFGIIL 224
GLGL SRRL + + +T+ + +RG+VF +++
Sbjct: 710 GLGLTISRRLARLMGGDITLESNGDRGSVFTLLM 743
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,619,090
Number of Sequences: 1393205
Number of extensions: 10759260
Number of successful extensions: 32867
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 31671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32838
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
