Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000934A_C02 KMC000934A_c02
(712 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_014691.1| RNA trafficking protein; transcription activato... 40 0.024
ref|ZP_00034763.1| hypothetical protein [Burkholderia fungorum] 40 0.024
gb|AAA16950.1| RAT1 40 0.024
ref|ZP_00089621.1| hypothetical protein [Azotobacter vinelandii] 39 0.071
ref|NP_492309.1| Putative protein, nematode specific [Caenorhabd... 38 0.12
>ref|NP_014691.1| RNA trafficking protein; transcription activator; Rat1p
[Saccharomyces cerevisiae] gi|417592|sp|Q02792|RAT1_YEAST
RIBONUCLEIC ACID TRAFFICKING PROTEIN 1 (5'-3'
EXORIBONUCLEASE) (P116) gi|83014|pir||S20126
exoribonuclease RAT1 (EC 3.1.11.-) - yeast (Saccharomyces
cerevisiae) gi|172365|gb|AAA34960.1| Rat1p
gi|386005|gb|AAB26818.1| transcription activator
[Saccharomyces cerevisiae] gi|1420179|emb|CAA99240.1| ORF
YOR048c [Saccharomyces cerevisiae]
Length = 1006
Score = 40.4 bits (93), Expect = 0.024
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = -3
Query: 641 RNDHQPRGGSARHRYNSQGAYASQHHEYPSQHGRHQNWTPRSNPSGPRGSGQHSTNQYAH 462
RN+ QP R+ YNSQ + + ++ + + R + +N SG R SGQ+S N Y+
Sbjct: 932 RNNVQPAHNYGRNSYNSQPGFNNSRYDGGNNNYRQNSNYRNNNYSGNRNSGQYSGNSYSR 991
Query: 461 LDR-------RANRK 438
++ RANR+
Sbjct: 992 NNKQSRYDNSRANRR 1006
>ref|ZP_00034763.1| hypothetical protein [Burkholderia fungorum]
Length = 292
Score = 40.4 bits (93), Expect = 0.024
Identities = 23/75 (30%), Positives = 30/75 (39%)
Frame = -3
Query: 671 HLHPISHPYVRNDHQPRGGSARHRYNSQGAYASQHHEYPSQHGRHQNWTPRSNPSGPRGS 492
H H S P+V +D+ G + A+A +HHEY G H N R RG
Sbjct: 3 HHHRFSRPHVADDNFSLGHEPTSLHALWHAFA-RHHEYRDHRGNHHNRGERDGRGDARGQ 61
Query: 491 GQHSTNQYAHLDRRA 447
G H + Y A
Sbjct: 62 GDHGGHGYGRFPLHA 76
>gb|AAA16950.1| RAT1
Length = 78
Score = 40.4 bits (93), Expect = 0.024
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = -3
Query: 641 RNDHQPRGGSARHRYNSQGAYASQHHEYPSQHGRHQNWTPRSNPSGPRGSGQHSTNQYAH 462
RN+ QP R+ YNSQ + + ++ + + R + +N SG R SGQ+S N Y+
Sbjct: 4 RNNVQPAHNYGRNSYNSQPGFNNSRYDGGNNNYRQNSNYRNNNYSGNRNSGQYSGNSYSR 63
Query: 461 LDR-------RANRK 438
++ RANR+
Sbjct: 64 NNKQSRYDNSRANRR 78
>ref|ZP_00089621.1| hypothetical protein [Azotobacter vinelandii]
Length = 623
Score = 38.9 bits (89), Expect = 0.071
Identities = 29/86 (33%), Positives = 37/86 (42%)
Frame = -3
Query: 677 NDHLHPISHPYVRNDHQPRGGSARHRYNSQGAYASQHHEYPSQHGRHQNWTPRSNPSGPR 498
N H P +H + PR G RH + HH HG Q R P+ R
Sbjct: 42 NHHGEPGAHRPQQTGQHPRPGLRRHLF---------HHRL--LHGDPQRLA-RDRPADSR 89
Query: 497 GSGQHSTNQYAHLDRRANRKPMPPPD 420
G G+ S + HLD++A R P P PD
Sbjct: 90 G-GRPSPHPARHLDQQARRLPRPAPD 114
>ref|NP_492309.1| Putative protein, nematode specific [Caenorhabditis elegans]
gi|7505109|pir||T23217 hypothetical protein K02B12.6 -
Caenorhabditis elegans gi|3878157|emb|CAB00030.1|
Hypothetical protein K02B12.6 [Caenorhabditis elegans]
Length = 134
Score = 38.1 bits (87), Expect = 0.12
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -3
Query: 710 YDPVQSNSYEGNDHLHPISHPYVRNDHQPRGGSARHRYNSQGAYASQHHEY-PSQHGRHQ 534
Y P Q+++Y G+ + + S+ ++H G + + N AS +H Y P HG H
Sbjct: 36 YQPFQTDTY-GSKYYNTESYGKY-DEHGNNGKDSHYEPNYYNPIASYYHSYMPKYHGGHN 93
Query: 533 NWTPRSNPSGPRGSGQHSTNQY 468
++ + N P G H N Y
Sbjct: 94 DYYTKYNQYTPYYGGSHQQNYY 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,456,443
Number of Sequences: 1393205
Number of extensions: 13049792
Number of successful extensions: 33352
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 31190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32959
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
