Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000933A_C01 KMC000933A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680410.1| similar to copia-like retroelement pol polyprot... 126 3e-28
ref|NP_195502.1| putative protein; protein id: At4g37890.1 [Arab... 80 3e-14
dbj|BAC41972.1| unknown protein [Arabidopsis thaliana] gi|290290... 80 3e-14
ref|NP_179853.1| copia-like retroelement pol polyprotein; protei... 73 3e-12
pir||T05901 hypothetical protein F6H11.200 - Arabidopsis thalian... 72 6e-12
>ref|NP_680410.1| similar to copia-like retroelement pol polyprotein; protein id:
At5g49665.1 [Arabidopsis thaliana]
gi|8978263|dbj|BAA98154.1| retroelement pol
polyprotein-like [Arabidopsis thaliana]
gi|23306382|gb|AAN17418.1| Unknown protein [Arabidopsis
thaliana]
Length = 740
Score = 126 bits (316), Expect = 3e-28
Identities = 66/99 (66%), Positives = 77/99 (77%), Gaps = 3/99 (3%)
Frame = -3
Query: 614 SGSASAAEYVRGLEAELAEVHWRRQQVEQVQVQIQQQQQQRRRGSDRE---VMSLVDENG 444
SG+ AAEY++ +EAEL EV WR QQ+ + Q Q QQQ QRRRGS+RE M+L+DENG
Sbjct: 647 SGTVEAAEYIKVVEAELVEVQWRGQQLMEYQSQHQQQHNQRRRGSERETTTTMTLMDENG 706
Query: 443 EPLTPTSAWRAAEKLAKMAMIKKSLNRVSDLHGFENARF 327
EPLTP SAWRAAEKLAK+AM+KK SDLHGFENARF
Sbjct: 707 EPLTPASAWRAAEKLAKLAMMKK-----SDLHGFENARF 740
>ref|NP_195502.1| putative protein; protein id: At4g37890.1 [Arabidopsis thaliana]
gi|7485841|pir||T05616 hypothetical protein F20D10.10 -
Arabidopsis thaliana gi|4467095|emb|CAB37529.1| putative
protein [Arabidopsis thaliana]
gi|7270772|emb|CAB80454.1| putative protein [Arabidopsis
thaliana]
Length = 720
Score = 79.7 bits (195), Expect = 3e-14
Identities = 48/97 (49%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Frame = -3
Query: 611 GSASAAEYVRGLEAELAEVHWRRQQVEQVQVQIQQQQQQRRRGSDREVMSL--VDENGEP 438
G +S+ +RGLEAELA+++ R RG V S V + EP
Sbjct: 643 GLSSSDSCLRGLEAELADLN-------------------RLRGRHVAVKSPEPVVQKSEP 683
Query: 437 LTPTSAWRAAEKLAKMAMIKKSLNRVSDLHGFENARF 327
LTPTSAWRAAE+LAK+A+++K +NRVSDLHGFENARF
Sbjct: 684 LTPTSAWRAAERLAKVAIMRKHMNRVSDLHGFENARF 720
>dbj|BAC41972.1| unknown protein [Arabidopsis thaliana] gi|29029038|gb|AAO64898.1|
At4g37890 [Arabidopsis thaliana]
Length = 739
Score = 79.7 bits (195), Expect = 3e-14
Identities = 48/97 (49%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Frame = -3
Query: 611 GSASAAEYVRGLEAELAEVHWRRQQVEQVQVQIQQQQQQRRRGSDREVMSL--VDENGEP 438
G +S+ +RGLEAELA+++ R RG V S V + EP
Sbjct: 662 GLSSSDSCLRGLEAELADLN-------------------RLRGRHVAVKSPEPVVQKSEP 702
Query: 437 LTPTSAWRAAEKLAKMAMIKKSLNRVSDLHGFENARF 327
LTPTSAWRAAE+LAK+A+++K +NRVSDLHGFENARF
Sbjct: 703 LTPTSAWRAAERLAKVAIMRKHMNRVSDLHGFENARF 739
>ref|NP_179853.1| copia-like retroelement pol polyprotein; protein id: At2g22680.1,
supported by cDNA: gi_20268716 [Arabidopsis thaliana]
gi|25370697|pir||E84615 copia-like retroelement pol
polyprotein [imported] - Arabidopsis thaliana
gi|4314365|gb|AAD15576.1| copia-like retroelement pol
polyprotein [Arabidopsis thaliana]
gi|20268717|gb|AAM14062.1| putative copia-like
retroelement pol polyprotein [Arabidopsis thaliana]
gi|23296688|gb|AAN13147.1| putative copia-like
retroelement pol polyprotein [Arabidopsis thaliana]
Length = 683
Score = 72.8 bits (177), Expect = 3e-12
Identities = 37/63 (58%), Positives = 45/63 (70%), Gaps = 9/63 (14%)
Frame = -3
Query: 488 RGSDREVMSL---------VDENGEPLTPTSAWRAAEKLAKMAMIKKSLNRVSDLHGFEN 336
RG D E+ L E+ E LTPTSAW+AAE+LAK+AM++K +NRVSDLHGFEN
Sbjct: 621 RGLDAEIADLNSVKGRHVAASESLESLTPTSAWKAAERLAKVAMVRKHMNRVSDLHGFEN 680
Query: 335 ARF 327
ARF
Sbjct: 681 ARF 683
>pir||T05901 hypothetical protein F6H11.200 - Arabidopsis thaliana
gi|2827718|emb|CAA16691.1| retrotransposon - like protein
[Arabidopsis thaliana] gi|10177325|dbj|BAB10674.1|
copia-like retroelement pol polyprotein-like [Arabidopsis
thaliana]
Length = 1021
Score = 72.0 bits (175), Expect = 6e-12
Identities = 34/70 (48%), Positives = 52/70 (73%)
Frame = -3
Query: 536 VEQVQVQIQQQQQQRRRGSDREVMSLVDENGEPLTPTSAWRAAEKLAKMAMIKKSLNRVS 357
+ ++V++ + + + R S +++ ++ E LTPTSAWRAAEKLAK+A+++K LNRVS
Sbjct: 955 LRSLEVELNELSRIKPRNS---ILNRTEDKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVS 1011
Query: 356 DLHGFENARF 327
D+HG ENARF
Sbjct: 1012 DMHGLENARF 1021
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,892,780
Number of Sequences: 1393205
Number of extensions: 13006851
Number of successful extensions: 108155
Number of sequences better than 10.0: 438
Number of HSP's better than 10.0 without gapping: 58798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89531
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
