Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000932A_C01 KMC000932A_c01
(877 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_253003.1| hypothetical protein [Pseudomonas aeruginosa PA... 33 4.3
sp|P08774|NU1M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 gi|8... 32 9.6
>ref|NP_253003.1| hypothetical protein [Pseudomonas aeruginosa PA01]
gi|11350141|pir||F83107 hypothetical protein PA4313
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9950536|gb|AAG07701.1|AE004847_8 hypothetical protein
[Pseudomonas aeruginosa PAO1]
Length = 333
Score = 33.5 bits (75), Expect = 4.3
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 505 TRNRLFPLRSVILGGCL*LGSRNILCWFMNIFNCLFLFAGRVGKRSDVDS 356
+R R FPL S++L + ++CWF+N L AGR GK + S
Sbjct: 28 SRLRAFPLDSLLL-----MFGMIVVCWFINGLRLRLLLAGRAGKLGQLQS 72
>sp|P08774|NU1M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 gi|83809|pir||A23431 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Neurospora crassa mitochondrion
gi|763159|emb|CAA27029.1| URF1 [Neurospora crassa]
Length = 371
Score = 32.3 bits (72), Expect = 9.6
Identities = 17/40 (42%), Positives = 24/40 (59%)
Frame = -2
Query: 264 LIDVCWNVILSILFFLLKVLHSTIFGSSYLFEHLWNLNIF 145
L+ CW V+L I+F L+ +L I S Y+ WNLN+F
Sbjct: 335 LMGFCWTVLLPIIFALI-ILVPCILESFYILP--WNLNLF 371
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 686,969,888
Number of Sequences: 1393205
Number of extensions: 14188619
Number of successful extensions: 34572
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34565
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47103382053
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
