Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000931A_C01 KMC000931A_c01
(738 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701179.1| hypothetical protein [Plasmodium falciparum 3D7... 35 1.4
pir||A71616 secreted protein PfS230 homolog PFB0400w - malaria p... 33 4.2
ref|NP_473008.2| hypothetical protein [Plasmodium falciparum 3D7... 33 4.2
gb|AAN28957.1| Wal1 protein [Eremothecium gossypii] 32 7.2
>ref|NP_701179.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496244|gb|AAN35903.1|AE014840_51 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1352
Score = 34.7 bits (78), Expect = 1.4
Identities = 22/77 (28%), Positives = 41/77 (52%), Gaps = 1/77 (1%)
Frame = -1
Query: 330 LVLKNFSHGYPENKEKHFQSDFYLPCFHHHF*N*LHVLFLLGLIFLVPIIFN*NNC-IKL 154
++ NFS+ Y EN+ Q+ F LP H + N + ++ L ++F I+ N N C K+
Sbjct: 907 IIQNNFSYSYNENRH---QNLFLLPFNHDEYTNNDNKMYRLHILF---ILLNKNYCEYKI 960
Query: 153 NFRINCVILHCHCLHQR 103
+ +NC+ + + Q+
Sbjct: 961 YYILNCIYMLIKLIKQK 977
>pir||A71616 secreted protein PfS230 homolog PFB0400w - malaria parasite
(Plasmodium falciparum)
Length = 2496
Score = 33.1 bits (74), Expect = 4.2
Identities = 17/55 (30%), Positives = 30/55 (53%)
Frame = +1
Query: 82 TKVQKVSPLMQAMTMQNNTIDPEIEFDTVVLIEDDRN*KNQTK*EENM*LVSKVM 246
+K++ V PL + + + I PE F+ V ++ED + K + EEN LV ++
Sbjct: 2121 SKIEVVCPLRNSSQFRQSKISPENFFEYVYVLEDKNDDKRKRSIEENEKLVKAIL 2175
>ref|NP_473008.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23503382|gb|AAC71869.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2508
Score = 33.1 bits (74), Expect = 4.2
Identities = 17/55 (30%), Positives = 30/55 (53%)
Frame = +1
Query: 82 TKVQKVSPLMQAMTMQNNTIDPEIEFDTVVLIEDDRN*KNQTK*EENM*LVSKVM 246
+K++ V PL + + + I PE F+ V ++ED + K + EEN LV ++
Sbjct: 2133 SKIEVVCPLRNSSQFRQSKISPENFFEYVYVLEDKNDDKRKRSIEENEKLVKAIL 2187
>gb|AAN28957.1| Wal1 protein [Eremothecium gossypii]
Length = 732
Score = 32.3 bits (72), Expect = 7.2
Identities = 21/56 (37%), Positives = 31/56 (54%), Gaps = 9/56 (16%)
Frame = +3
Query: 195 EKSNQVGREHVI-SFKSDGG----NKVDRSQIENVSPYFQDNHGK----NSSALTP 335
E + GR+ ++ S +S GG KVD+SQ++ S Q+ HGK S A+TP
Sbjct: 642 EATGDTGRDALLASIRSAGGVQALRKVDKSQLDKPSVLLQEAHGKAPASTSQAMTP 697
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,886,321
Number of Sequences: 1393205
Number of extensions: 10324275
Number of successful extensions: 22130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22124
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
