Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000929A_C01 KMC000929A_c01
(468 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK92546.1|AC051624_4 Hypothetical protein [Oryza sativa] 102 2e-21
dbj|BAB84832.1| sumilar to Oryza sativa chromosome 10, OSJNBb003... 101 4e-21
gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 84 9e-16
ref|NP_230901.1| ribonucleoside-diphosphate reductase, alpha sub... 33 1.5
ref|NP_245654.1| NrdA [Pasteurella multocida] gi|12721011|gb|AAK... 33 1.5
>gb|AAK92546.1|AC051624_4 Hypothetical protein [Oryza sativa]
Length = 1204
Score = 102 bits (255), Expect = 2e-21
Identities = 60/157 (38%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Frame = -3
Query: 454 EDKSTILEKKKENGE-----EDAVATLIYTIILHFIGDPSIFRERASSQLANLYCPTMSD 290
+D+ L + NG DA+ATLIY II HF G+ E+ QL NL C TMSD
Sbjct: 118 DDQGRPLPDRDGNGNPTGNISDALATLIYNIIYHFAGNYHDIYEKNREQLINLKCKTMSD 177
Query: 289 YRWYKDTFFSKVTLREDGNSAFWKERFIAGLPRLMQSKVLDNLSLFNQGNPVNFGSLSFG 110
+RWYKDTF SK+ + N FWKE++I+GLP L KV ++L G +N+ L G
Sbjct: 178 FRWYKDTFLSKLYTLPEPNQDFWKEKYISGLPPLFAEKVRNSLRK-EGGGSINYHYLDIG 236
Query: 109 QLHNTIVHTGIQFVLTSNFKTNAKDMPI-SRKEVGSF 2
++ I G++ K K I ++E+G F
Sbjct: 237 KITQKIQLVGVELCNDLKIKDQLKKQRILGKREMGDF 273
>dbj|BAB84832.1| sumilar to Oryza sativa chromosome 10, OSJNBb0036B06.4 [Oryza
sativa (japonica cultivar-group)]
gi|20804792|dbj|BAB92476.1| sumilar to Oryza sativa
chromosome 10, OSJNBb0036B06.4 [Oryza sativa (japonica
cultivar-group)]
Length = 1634
Score = 101 bits (251), Expect = 4e-21
Identities = 60/157 (38%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Frame = -3
Query: 454 EDKSTILEKKKENGE-----EDAVATLIYTIILHFIGDPSIFRERASSQLANLYCPTMSD 290
+D+ L + NG DA+ATLIY II HF G+ E+ QL NL C TMSD
Sbjct: 510 DDQGRPLPDRDGNGNPTGNISDALATLIYNIIYHFAGNYHDIYEKNREQLINLKCKTMSD 569
Query: 289 YRWYKDTFFSKVTLREDGNSAFWKERFIAGLPRLMQSKVLDNLSLFNQGNPVNFGSLSFG 110
+RWYKDTF SK+ + N FWKE++I+GLP L KV ++L G +N+ L G
Sbjct: 570 FRWYKDTFLSKLYTLPEPNQDFWKEKYISGLPPLFAEKVRNSLRK-EGGGSINYHYLDIG 628
Query: 109 QLHNTIVHTGIQFVLTSNFKTNAKDMPI-SRKEVGSF 2
++ I G + K K I ++E+G F
Sbjct: 629 KITQKIQLVGAELCNDLKIKDQLKKQRILGKREMGDF 665
>gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata]
Length = 3148
Score = 83.6 bits (205), Expect = 9e-16
Identities = 43/121 (35%), Positives = 73/121 (59%), Gaps = 1/121 (0%)
Frame = -3
Query: 361 GDPSIFRERASSQLANLYCPTMSDYRWYKDTFFSKVTLREDGNSAFWKERFIAGLPRLMQ 182
GDPS R++ + L NL C +SD++ YK TFF+++ LR+D N WKE+F+AGLP L+
Sbjct: 708 GDPSHLRDKNAELLHNLRCRKLSDFQLYKTTFFTRLFLRDDANHTTWKEKFLAGLPTLLG 767
Query: 181 SKVLDNLSLFNQGNPVNFGSLSFGQLHNTIVHTGIQFVLTSNFKTNAK-DMPISRKEVGS 5
KV +++ N + + L++GQL + + G++ + K ++ S++E+GS
Sbjct: 768 EKVRNSIKAL-YDNRIPYDELTYGQLVSFVNKEGLKICQDLKLQKRLKQELRQSKRELGS 826
Query: 4 F 2
F
Sbjct: 827 F 827
Score = 77.0 bits (188), Expect = 9e-14
Identities = 41/121 (33%), Positives = 71/121 (57%), Gaps = 1/121 (0%)
Frame = -3
Query: 361 GDPSIFRERASSQLANLYCPTMSDYRWYKDTFFSKVTLREDGNSAFWKERFIAGLPRLMQ 182
GDPS R++ + L NL C +SD++ YK TFF+++ LR+D N WKE+F+A LP L+
Sbjct: 1963 GDPSHLRDKNAELLHNLRCRKLSDFQLYKTTFFTRLFLRDDANHTTWKEKFLACLPTLLG 2022
Query: 181 SKVLDNLSLFNQGNPVNFGSLSFGQLHNTIVHTGIQFVLTSNFKTNAK-DMPISRKEVGS 5
KV + + N + + L++G+L + + G++ + K ++ S++E+GS
Sbjct: 2023 EKVRNFIKAL-YDNRIPYDELTYGELVSFVNKEGLKICQDLKLQKRLKQEIRQSKRELGS 2081
Query: 4 F 2
F
Sbjct: 2082 F 2082
>ref|NP_230901.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
cholerae] gi|11356076|pir||E82223
ribonucleoside-diphosphate reductase, alpha chain VC1256
[imported] - Vibrio cholerae (strain N16961 serogroup
O1) gi|9655739|gb|AAF94415.1| ribonucleoside-diphosphate
reductase, alpha subunit [Vibrio cholerae]
Length = 761
Score = 33.1 bits (74), Expect = 1.5
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = -1
Query: 354 LAYLERELQASSLISIVLPCPITDGIRTPSSQ 259
L Y++R A+S I LP PI G+RTP+ Q
Sbjct: 190 LDYIKRFYDATSTFKISLPTPIMSGVRTPTRQ 221
>ref|NP_245654.1| NrdA [Pasteurella multocida] gi|12721011|gb|AAK02801.1| NrdA
[Pasteurella multocida]
Length = 756
Score = 33.1 bits (74), Expect = 1.5
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = -1
Query: 354 LAYLERELQASSLISIVLPCPITDGIRTPSSQ 259
L+Y+ R A+S I LP PI G+RTP+ Q
Sbjct: 190 LSYIRRFYDATSTFKISLPTPIMAGVRTPTRQ 221
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 353,159,868
Number of Sequences: 1393205
Number of extensions: 6683080
Number of successful extensions: 15434
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 15081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15423
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
