>KMC000926A_C01 KMC000926A_c01
CCTTTTAAAAAAAAACTTTTTTAGGTACATGAAAAACCAAATGGCATCATCAAATGATGG
ATCCTTAGACCCCCTTCATCTAATCTATATGCTCTATAACTCTTACCACTTGAGCTATCA
CTCGGAGACATCGATTAAACACTAATAAAGAACCAAAAAATTATGAAACTATACACGTGT
CCACTTGGACTGGCGTACATTTTTTTATACCTGCAAAATGCAATGCACAATGTTGAAAAT
TAGATTATGTGAAGTAATGTACATTTGAAAATCAGATAAATGGAAGTGCAAACTTCTCAA
AGAGCACTATTACTAATTTATATACACACATCTAAGGCAAATAGTTATAGAGAAAAGTGT
TAGTGGAGAATTTTTTGGGCATTGATATCAAAGTTTATGCTAAAACCTCCAGCTTTAATT
TTTAATGATTAAAATTAATTTTACTTAATATTTCTATAAATCCAAAATAATCACTAATCA
GTCAGG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000926A_C01 KMC000926A_c01
         (486 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_239907.1| flagellar M-ring protein [Buchnera sp. APS] gi|...    32  2.9

>ref|NP_239907.1| flagellar M-ring protein [Buchnera sp. APS]
           gi|11386782|sp|P57175|FLIF_BUCAI Flagellar M-ring
           protein gi|25304707|pir||A84938 flagellar M-ring protein
           [imported] - Buchnera sp. (strain APS)
           gi|10038758|dbj|BAB12793.1| flagellar M-ring protein
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 545

 Score = 32.3 bits (72), Expect = 2.9
 Identities = 12/31 (38%), Positives = 19/31 (60%)
 Frame = -3

Query: 370 FSTNTFLYNYLP*MCVYKLVIVLFEKFALPF 278
           F  + FLYN+ P  C + L+ +L +K+  PF
Sbjct: 446 FRKSNFLYNFAPWFCSFALLFLLLKKYICPF 476

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 370,897,937
Number of Sequences: 1393205
Number of extensions: 7302866
Number of successful extensions: 11348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11346
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 GENLf055a07 BP065261 1 123 2 GENLf045c05 BP064709 14 500

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