Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000925A_C01 KMC000925A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM18228.1| R1 [Citrus reticulata] 84 2e-15
pir||T07050 hypothetical protein R1 - potato gi|3287270|emb|CAA7... 61 1e-08
gb|AAK11735.1| starch associated protein R1 [Solanum tuberosum] 60 2e-08
ref|NP_563877.1| expressed protein; protein id: At1g10760.1, sup... 53 4e-08
pir||B86241 hypothetical protein [imported] - Arabidopsis thalia... 53 4e-08
>gb|AAM18228.1| R1 [Citrus reticulata]
Length = 1475
Score = 83.6 bits (205), Expect = 2e-15
Identities = 61/172 (35%), Positives = 87/172 (50%), Gaps = 8/172 (4%)
Frame = +3
Query: 117 STKMSHSIFHQTLLCQTQTVAEHQSKVSSRG---KHLFPALSVSKEQRSFVLLLTNSPRE 287
S + ++ HQ+LLC T V EHQS S G LF A+S++ Q + SP
Sbjct: 2 SNSIGRNVLHQSLLCST--VFEHQSNRHSSGIPANSLFQAVSIN--QPAGASAARKSPLS 57
Query: 288 TGFVLEGETEISPWEENRNTGG*FRVLC*PS-----NAASELSREVQPLMETLNYRLVLV 452
T F R+ VL P ++ASEL+ + L + ++ +
Sbjct: 58 TKFYGTSLNARPKMAMGRHRP----VLITPRAVLAVDSASELAGKFN-LEGNVELQITVG 112
Query: 453 LQGPGGATQVDIQVSNKSGSLILHWGVLHESQRKWVLPSRHPDGTQVYKNRA 608
PG TQV+I++S S SL+LHWG + + + KWVLPSR PDGT++ KNRA
Sbjct: 113 APTPGSLTQVNIEISYSSNSLLLHWGAIRDKKEKWVLPSRPPDGTKILKNRA 164
>pir||T07050 hypothetical protein R1 - potato gi|3287270|emb|CAA70725.1|
involved in starch metabalism [Solanum tuberosum]
Length = 1464
Score = 61.2 bits (147), Expect = 1e-08
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 6/170 (3%)
Frame = +3
Query: 117 STKMSHSIFHQTLLCQTQTVAEHQSKVSSR---GKHLFPALSVSKEQRSFVLLLTNSPRE 287
S + +++ +Q L T TV EH+S++S G LF +SK SP
Sbjct: 2 SNSLGNNLLYQGFL--TSTVLEHKSRISPPCVGGNSLFQQQVISK-----------SPLS 48
Query: 288 TGFV---LEGETEISPWEENRNTGG*FRVLC*PSNAASELSREVQPLMETLNYRLVLVLQ 458
T F L+ + + P E+ R + ++ +SEL+ + L + ++ +
Sbjct: 49 TEFRGNRLKVQKKKIPMEKKRAFSSSPHAVL-TTDTSSELAEKFS-LGGNIELQVDVRPP 106
Query: 459 GPGGATQVDIQVSNKSGSLILHWGVLHESQRKWVLPSRHPDGTQVYKNRA 608
G + VD QV+N S L LHWG + + W LP+ PDGT+VYKN+A
Sbjct: 107 TSGDVSFVDFQVTNGSDKLFLHWGAVKFGKETWSLPNDRPDGTKVYKNKA 156
>gb|AAK11735.1| starch associated protein R1 [Solanum tuberosum]
Length = 1464
Score = 60.1 bits (144), Expect = 2e-08
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Frame = +3
Query: 117 STKMSHSIFHQTLLCQTQTVAEHQSKVSSR---GKHLFPALSVSKEQRSFVLLLTNSPRE 287
S + +++ +Q L T TV EH+S++S G LF +SK SP
Sbjct: 2 SNSLGNNLLYQGFL--TSTVLEHKSRISPPCVGGNSLFQQQVISK-----------SPLS 48
Query: 288 TGFV---LEGETEISPWEENRNTGG*FRVLC*PSNAASELSREVQPLMETLNYRLVLVLQ 458
T F L+ + + P +NR + ++ +S+L+ + +E N L + ++
Sbjct: 49 TEFRGNRLKVQKKKIPMGKNRAFSSSPHAVL-TTDTSSQLAEKFS--LEG-NIELQVDVR 104
Query: 459 GP--GGATQVDIQVSNKSGSLILHWGVLHESQRKWVLPSRHPDGTQVYKNRA 608
P G + VD QV+N S L LHWG + + W LP+ PDGT+VYKN+A
Sbjct: 105 PPTSGDVSFVDFQVTNGSDKLFLHWGAVKFGKETWSLPNDRPDGTKVYKNKA 156
>ref|NP_563877.1| expressed protein; protein id: At1g10760.1, supported by cDNA:
gi_12044357 [Arabidopsis thaliana]
gi|12044358|gb|AAG47821.1|AF312027_1 SEX1 [Arabidopsis
thaliana]
Length = 1399
Score = 53.1 bits (126), Expect(2) = 4e-08
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +3
Query: 477 QVDIQVSNKSGSLILHWGVLHESQRKWVLPSRHPDGTQVYKNRA 608
+V+IQ++ S +L LHWG + +++ WVLPSR PD TQ +KN A
Sbjct: 106 EVNIQIAYTSDTLFLHWGAILDNKENWVLPSRSPDRTQNFKNSA 149
Score = 25.8 bits (55), Expect(2) = 4e-08
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 356 IPRAVLTFECCF*AFKGSSTLDGNIELQVGVSSSGTRRCN 475
+PRAVL + +LDGNI+L V V+S+ R N
Sbjct: 72 VPRAVLAMDP---QAAEKFSLDGNIDLLVEVTSTTVREVN 108
>pir||B86241 hypothetical protein [imported] - Arabidopsis thaliana
gi|4874272|gb|AAD31337.1|AC007354_10 Strong similarity
to gb|Y09533 involved in starch metabolism from Solanum
tuberosum and contains a PF|01326 Pyruvate phosphate
dikinase, PEP/pyruvate binding domain. EST gb|N96757
comes from this gene. [Arabidopsis thaliana]
Length = 1358
Score = 53.1 bits (126), Expect(2) = 4e-08
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +3
Query: 477 QVDIQVSNKSGSLILHWGVLHESQRKWVLPSRHPDGTQVYKNRA 608
+V+IQ++ S +L LHWG + +++ WVLPSR PD TQ +KN A
Sbjct: 106 EVNIQIAYTSDTLFLHWGAILDNKENWVLPSRSPDRTQNFKNSA 149
Score = 25.8 bits (55), Expect(2) = 4e-08
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 356 IPRAVLTFECCF*AFKGSSTLDGNIELQVGVSSSGTRRCN 475
+PRAVL + +LDGNI+L V V+S+ R N
Sbjct: 72 VPRAVLAMDP---QAAEKFSLDGNIDLLVEVTSTTVREVN 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,869,829
Number of Sequences: 1393205
Number of extensions: 12182488
Number of successful extensions: 35086
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 34041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35062
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
