KMC000924A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC000924A_C01 KMC000924A_c01
ctgctcactcttcatcatggcaaatgcagcatcaggtatggcggtccatgatgactgcaa
gttacggttgtggaacttaaGGCAAAAAGGACACACAGGTTCATAATTTATAAGATTGAG
GAGAAGCAGAAGCAAGTCATTGTGGAGAAGCTTGGTGAGCCTGCCCAAGGCTATGAGGAT
TTTGCTGCTTGCCTTCCTGCTGATGAGTGTCGTTATGCTGTGTATGATTTTGAGTTTCTG
ACAGAAGGGAATGTCCCCAAAAGCAGGATTTTCTTCGTTGCATGGTCCCCTGACACATCA
AGGGTTCGAAGCAAGATGATTTATGCTAGCTCCAAAGATAGATTCAAGAGGGAGCTGGAT
GGGATTCAAATAGAGTTGCAAGCAACTGATCCTACTGAGGTGGGTCTTGACGTGTTCAAA
AGCCGTGTGAACTAAATGATCATGAATAGCAGCAGCCTTTGTGCCCTTGTGCTTGATTAT
TATTATGGAAATTTCTAGTTTGTGGATGGTCATTTGGGACAGTTATGGTCTCAATTTGCC
AAGTTAGTGTCTATGGCACCTGGAGTGTATCTCATGACTTATACCTCCTTTATGTTGATG
TGGCATTTGAGTCTTATGCTTACTTGTTGAATTTGTAAATGTTTTGTGTGATGGTGTTCT
TTATATGACTTCATTTGGGCAATATATCCTCTCTTTTATGTGGATAGGAT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000924A_C01 KMC000924A_c01
(710 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2 (ADF 2) gi|10... 208 5e-53
ref|NP_190187.1| actin depolymerizing factor 1 (ADF1); protein i... 207 1e-52
sp|Q9FVI2|ADF1_PETHY Actin-depolymerizing factor 1 (ADF 1) gi|10... 205 4e-52
ref|NP_568915.1| actin depolymerizing factor 3 - like protein; p... 205 6e-52
ref|NP_680459.1| actin depolymerizing factor 4 - like protein; p... 204 7e-52
>sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2 (ADF 2)
gi|10441258|gb|AAG16974.1|AF183904_1
actin-depolymerizing factor 2 [Petunia x hybrida]
gi|14906210|gb|AAK72616.1| actin-depolymerizing factor 2
[Petunia x hybrida]
Length = 143
Score = 208 bits (530), Expect = 5e-53
Identities = 101/137 (73%), Positives = 117/137 (84%)
Frame = +1
Query: 16 HGKCSIRYGGP**LQVTVVELKAKRTHRFIIYKIEEKQKQVIVEKLGEPAQGYEDFAACL 195
H C +++ +ELKAKRT+RFIIYKIEEKQK+V+VEKLGEP + YEDF A L
Sbjct: 11 HDDCKLKF----------LELKAKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGL 60
Query: 196 PADECRYAVYDFEFLTEGNVPKSRIFFVAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 375
PADECRYAVYDF+F+T+ N KSRIFF+AWSPDT+RVRSKMIYASSKDRFKRELDGIQ+E
Sbjct: 61 PADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVE 120
Query: 376 LQATDPTEVGLDVFKSR 426
LQATDPTE+GLDVF+SR
Sbjct: 121 LQATDPTEMGLDVFRSR 137
Score = 40.8 bits (94), Expect = 0.019
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2
Query: 17 MANAASGMAVHDDCKLRLWNLRQK 88
MANAASGMAVHDDCKL+ L+ K
Sbjct: 1 MANAASGMAVHDDCKLKFLELKAK 24
>ref|NP_190187.1| actin depolymerizing factor 1 (ADF1); protein id: At3g46010.1,
supported by cDNA: 1907., supported by cDNA: gi_1408470,
supported by cDNA: gi_14334961 [Arabidopsis thaliana]
gi|17366511|sp|Q39250|ADF1_ARATH Actin-depolymerizing
factor 1 (ADF-1) (AtADF1) gi|11513711|pdb|1F7S|A Chain
A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
gi|1408471|gb|AAB03696.1| actin depolymerizing factor 1
gi|3851707|gb|AAC72407.1| actin depolymerizing factor 1
[Arabidopsis thaliana] gi|7630029|emb|CAB88325.1| actin
depolymerizing factor 1 (ADF1) [Arabidopsis thaliana]
gi|14334962|gb|AAK59658.1| putative actin depolymerizing
factor ADF1 [Arabidopsis thaliana]
gi|17065584|gb|AAL33770.1| putative actin depolymerizing
factor 1 [Arabidopsis thaliana]
gi|21553985|gb|AAM63066.1| actin-depolymerizing factor
ADF-1 (AtADF1) [Arabidopsis thaliana]
Length = 139
Score = 207 bits (527), Expect = 1e-52
Identities = 98/139 (70%), Positives = 116/139 (82%)
Frame = +1
Query: 16 HGKCSIRYGGP**LQVTVVELKAKRTHRFIIYKIEEKQKQVIVEKLGEPAQGYEDFAACL 195
H C +R+ +ELKAKRTHRFI+YKIEEKQKQV+VEK+G+P Q YE+FAACL
Sbjct: 11 HDDCKLRF----------LELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60
Query: 196 PADECRYAVYDFEFLTEGNVPKSRIFFVAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 375
PADECRYA+YDF+F+T N KS+IFF+AW PD ++VRSKMIYASSKDRFKRELDGIQ+E
Sbjct: 61 PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120
Query: 376 LQATDPTEVGLDVFKSRVN 432
LQATDPTE+ LDVF+SR N
Sbjct: 121 LQATDPTEMDLDVFRSRAN 139
Score = 42.0 bits (97), Expect = 0.008
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 MANAASGMAVHDDCKLRLWNLRQK 88
MANAASGMAVHDDCKLR L+ K
Sbjct: 1 MANAASGMAVHDDCKLRFLELKAK 24
>sp|Q9FVI2|ADF1_PETHY Actin-depolymerizing factor 1 (ADF 1)
gi|10441256|gb|AAG16973.1|AF183903_1
actin-depolymerizing factor 1 [Petunia x hybrida]
gi|14906219|gb|AAK72617.1| actin-depolymerizing factor 1
[Petunia x hybrida]
Length = 139
Score = 205 bits (522), Expect = 4e-52
Identities = 99/139 (71%), Positives = 114/139 (81%)
Frame = +1
Query: 16 HGKCSIRYGGP**LQVTVVELKAKRTHRFIIYKIEEKQKQVIVEKLGEPAQGYEDFAACL 195
H C +R+ +ELKAKRTHRFI+YKIEEKQKQV+VEK+GEP + YEDFAA L
Sbjct: 11 HDDCKLRF----------LELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASL 60
Query: 196 PADECRYAVYDFEFLTEGNVPKSRIFFVAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 375
P +ECRYAVYDF+F+T N KSRIFF+AW PDT+RVRSKMIYASSKDRFKRELDGIQ+E
Sbjct: 61 PENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVE 120
Query: 376 LQATDPTEVGLDVFKSRVN 432
LQA DPTE+GLDV +SR N
Sbjct: 121 LQACDPTEMGLDVIQSRAN 139
Score = 42.0 bits (97), Expect = 0.008
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 17 MANAASGMAVHDDCKLRLWNLRQK 88
MANAASGMAVHDDCKLR L+ K
Sbjct: 1 MANAASGMAVHDDCKLRFLELKAK 24
>ref|NP_568915.1| actin depolymerizing factor 3 - like protein; protein id:
At5g59880.1, supported by cDNA: 20973., supported by
cDNA: gi_13430513, supported by cDNA: gi_15215611,
supported by cDNA: gi_4185508 [Arabidopsis thaliana]
gi|17367315|sp|Q9ZSK4|ADF3_ARATH Actin-depolymerizing
factor 3 (ADF 3) (AtADF3) gi|4185509|gb|AAD09109.1|
actin depolymerizing factor 3 [Arabidopsis thaliana]
gi|9757909|dbj|BAB08356.1| actin depolymerizing factor 3
[Arabidopsis thaliana]
gi|13430514|gb|AAK25879.1|AF360169_1 putative actin
depolymerizing factor 3 [Arabidopsis thaliana]
gi|15215612|gb|AAK91351.1| AT5g59880/mmn10_100
[Arabidopsis thaliana] gi|15810613|gb|AAL07194.1|
putative actin depolymerizing factor 3 [Arabidopsis
thaliana] gi|20334866|gb|AAM16189.1| AT5g59880/mmn10_100
[Arabidopsis thaliana] gi|21554197|gb|AAM63276.1| actin
depolymerizing factor 3-like protein [Arabidopsis
thaliana]
Length = 139
Score = 205 bits (521), Expect = 6e-52
Identities = 100/139 (71%), Positives = 115/139 (81%)
Frame = +1
Query: 16 HGKCSIRYGGP**LQVTVVELKAKRTHRFIIYKIEEKQKQVIVEKLGEPAQGYEDFAACL 195
H C +++ +ELK KRTHRFIIYKIEE QKQVIVEK+GEP Q +ED AA L
Sbjct: 11 HDDCKLKF----------MELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASL 60
Query: 196 PADECRYAVYDFEFLTEGNVPKSRIFFVAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 375
PADECRYA++DF+F++ VP+SRIFFVAWSPDT+RVRSKMIYASSKDRFKRELDGIQ+E
Sbjct: 61 PADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVE 120
Query: 376 LQATDPTEVGLDVFKSRVN 432
LQATDPTE+ LDVFKSR N
Sbjct: 121 LQATDPTEMDLDVFKSRAN 139
Score = 41.2 bits (95), Expect = 0.014
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2
Query: 17 MANAASGMAVHDDCKLRLWNLRQK 88
MANAASGMAVHDDCKL+ L+ K
Sbjct: 1 MANAASGMAVHDDCKLKFMELKTK 24
>ref|NP_680459.1| actin depolymerizing factor 4 - like protein; protein id:
At5g59890.2, supported by cDNA: gi_15215858 [Arabidopsis
thaliana] gi|15215859|gb|AAK91473.1| AT5g59890/mmn10_110
[Arabidopsis thaliana] gi|19699262|gb|AAL90997.1|
At1g05180/YUP8H12_21 [Arabidopsis thaliana]
Length = 132
Score = 204 bits (520), Expect = 7e-52
Identities = 100/139 (71%), Positives = 114/139 (81%)
Frame = +1
Query: 16 HGKCSIRYGGP**LQVTVVELKAKRTHRFIIYKIEEKQKQVIVEKLGEPAQGYEDFAACL 195
H C +R+ +ELKAKRTHRFI+YKIEEKQKQVIVEK+GEP YEDFAA L
Sbjct: 4 HDDCKLRF----------LELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASL 53
Query: 196 PADECRYAVYDFEFLTEGNVPKSRIFFVAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 375
PADECRYA+YDF+F+T N KS+IFF+AW PD ++VRSKMIYASSKDRFKRELDGIQ+E
Sbjct: 54 PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVE 113
Query: 376 LQATDPTEVGLDVFKSRVN 432
LQATDPTE+ LDV KSRVN
Sbjct: 114 LQATDPTEMDLDVLKSRVN 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 626,429,387
Number of Sequences: 1393205
Number of extensions: 13413985
Number of successful extensions: 37060
Number of sequences better than 10.0: 144
Number of HSP's better than 10.0 without gapping: 33398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36598
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
GENLf045b09 |
BP064702 |
1 |
529 |
| 2 |
MFB043e12_f |
BP037151 |
101 |
711 |
| 3 |
MPDL060a12_f |
AV779533 |
102 |
615 |
| 4 |
GNf062c07 |
BP071963 |
293 |
715 |
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Lotus japonicus
Kazusa DNA Research Institute