Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000923A_C01 KMC000923A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB61056.1| WRKY DNA-binding protein [Nicotiana tabacum] 96 3e-19
dbj|BAA86031.1| transcription factor NtWRKY4 [Nicotiana tabacum] 95 4e-19
emb|CAC36402.1| hypothetical protein [Lycopersicon esculentum] 90 2e-17
emb|CAC36397.1| hypothetical protein [Lycopersicon esculentum] 89 3e-17
ref|NP_200438.1| WRKY family transcription factor; protein id: A... 53 2e-06
>dbj|BAB61056.1| WRKY DNA-binding protein [Nicotiana tabacum]
Length = 727
Score = 95.9 bits (237), Expect = 3e-19
Identities = 54/123 (43%), Positives = 76/123 (60%), Gaps = 12/123 (9%)
Frame = -2
Query: 524 IHRPEPSQVHNSMGRLEX-PSLGSFNLPGXQHLGPPHGFSFGMNQPMLSNMAI------- 369
+HRPEP+Q+ N+M R + PSLGSF GP G+S+G+NQ L+++A+
Sbjct: 613 LHRPEPAQLQNAMARFDRQPSLGSF--------GPTPGYSYGINQQGLASLAMAGFHPNQ 664
Query: 368 ----QSMPFHPFSAQQRPANEMGFMLPKGEPNVEPMPERGGLNMPSRDSSVYQEMMSRMP 201
Q +P H + Q RP ++ GFM PK EP EPM + GL++ S SS+YQ+ MSR+P
Sbjct: 665 SKSQQQIPVHSYLGQPRPMHDGGFMFPKEEPKAEPMSD-PGLDL-SNGSSIYQQFMSRLP 722
Query: 200 LGP 192
LGP
Sbjct: 723 LGP 725
>dbj|BAA86031.1| transcription factor NtWRKY4 [Nicotiana tabacum]
Length = 490
Score = 95.1 bits (235), Expect = 4e-19
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 12/123 (9%)
Frame = -2
Query: 524 IHRPEPSQVHNSMGRLEX-PSLGSFNLPGXQHLGPPHGFSFGMNQPMLSNMAI------- 369
+HRPEP+Q+ N+M R + PSLGSF GP G+S+G+NQ L+++A+
Sbjct: 376 LHRPEPAQLQNAMARFDRQPSLGSF--------GPTPGYSYGINQQGLASLAMAGFHPNQ 427
Query: 368 ----QSMPFHPFSAQQRPANEMGFMLPKGEPNVEPMPERGGLNMPSRDSSVYQEMMSRMP 201
Q +P H + Q RP ++ GFM PK EP EPM + GL++ S SS+YQ+ MSR P
Sbjct: 428 SKSQQQIPVHSYLGQPRPMHDEGFMFPKEEPKAEPMSD-PGLDL-SNGSSIYQQFMSRSP 485
Query: 200 LGP 192
LGP
Sbjct: 486 LGP 488
>emb|CAC36402.1| hypothetical protein [Lycopersicon esculentum]
Length = 739
Score = 89.7 bits (221), Expect = 2e-17
Identities = 52/124 (41%), Positives = 72/124 (57%), Gaps = 13/124 (10%)
Frame = -2
Query: 524 IHRPEPSQVHNSMGRLEX-PSLGSFNLPGXQ-HLGPPHGFSFGMNQPM-LSNMAIQS--- 363
+HRPE +Q+ N+M R + PSLGSF L G LGP GFS+GMNQ LS++A+
Sbjct: 622 LHRPEAAQLQNAMARFDRQPSLGSFGLSGRPPQLGPNPGFSYGMNQQGGLSSLAMAGFHP 681
Query: 362 -------MPFHPFSAQQRPANEMGFMLPKGEPNVEPMPERGGLNMPSRDSSVYQEMMSRM 204
+P HP+ Q RP ++MGFM PK EP VEP+ + G + YQ+ ++ +
Sbjct: 682 NQNKPGEVPMHPYLGQPRPMHDMGFMFPKEEPKVEPLSDPG--------PTAYQQFLNSL 733
Query: 203 PLGP 192
LGP
Sbjct: 734 SLGP 737
>emb|CAC36397.1| hypothetical protein [Lycopersicon esculentum]
Length = 739
Score = 89.0 bits (219), Expect = 3e-17
Identities = 52/124 (41%), Positives = 72/124 (57%), Gaps = 13/124 (10%)
Frame = -2
Query: 524 IHRPEPSQVHNSMGRLEX-PSLGSFNLPGXQ-HLGPPHGFSFGMNQPM-LSNMAIQS--- 363
+HRPE +Q+ N+M R + PSLGSF L G LGP GFS+GMNQ LS++A+
Sbjct: 622 LHRPEAAQLQNAMARFDRQPSLGSFGLSGRPPQLGPNPGFSYGMNQQGGLSSLAMAGFHP 681
Query: 362 -------MPFHPFSAQQRPANEMGFMLPKGEPNVEPMPERGGLNMPSRDSSVYQEMMSRM 204
+P HP+ Q RP ++MGFM PK EP VEP+ + G + YQ+ ++ +
Sbjct: 682 NQNKPGEVPMHPYLGQPRPMHDMGFMFPKEEPKVEPLSDPG--------PTAYQQFLNSL 733
Query: 203 PLGP 192
LGP
Sbjct: 734 LLGP 737
>ref|NP_200438.1| WRKY family transcription factor; protein id: At5g56270.1,
supported by cDNA: gi_15991723, supported by cDNA:
gi_20465415 [Arabidopsis thaliana]
gi|9758400|dbj|BAB08871.1| transcription factor
NtWRKY4-like [Arabidopsis thaliana]
gi|15991724|gb|AAL13039.1|AF418308_1 WRKY transcription
factor 2 [Arabidopsis thaliana]
gi|20465416|gb|AAM20132.1| putative transcription factor
NtWRKY4 [Arabidopsis thaliana]
gi|21689791|gb|AAM67539.1| putative transcription factor
NtWRKY4 [Arabidopsis thaliana]
Length = 687
Score = 52.8 bits (125), Expect = 2e-06
Identities = 32/88 (36%), Positives = 46/88 (51%), Gaps = 10/88 (11%)
Frame = -2
Query: 434 HLGPPHGFSFGMNQPMLSNMAIQSMPF---------HPFSAQQRPANEMGFMLPKG-EPN 285
HLGPP GFSFG+ Q L N+++ + + HP+ Q P M+ +G EP
Sbjct: 608 HLGPPSGFSFGLGQTGLVNLSMPGLAYGQGKMPGLPHPYMTQ--PVGMSEAMMQRGMEPK 665
Query: 284 VEPMPERGGLNMPSRDSSVYQEMMSRMP 201
VEP+ + G SVY ++MSR+P
Sbjct: 666 VEPVSDSG--------QSVYNQIMSRLP 685
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,591,089
Number of Sequences: 1393205
Number of extensions: 10007524
Number of successful extensions: 24752
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24732
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
