Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000919A_C02 KMC000919A_c02
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P48935|C560_CYACA Succinate dehydrogenase cytochrome b560 sub... 36 0.32
ref|NP_694903.1| NADH dehydrogenase subunit 2 [Brugia malayi] gi... 36 0.42
gb|EAA19369.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.94
pir||T31613 hypothetical protein Y50E8A.i - Caenorhabditis elegans 35 0.94
ref|NP_477686.1| wsv164 [shrimp white spot syndrome virus] gi|17... 34 1.2
>sp|P48935|C560_CYACA Succinate dehydrogenase cytochrome b560 subunit (Succinate
dehydrogenase, subunit III) gi|2148068|pir||S62755
succinate dehydrogenase (ubiquinone) (EC 1.3.5.1)
cytochrome b560 - red alga (Cyanidium caldarium)
mitochondrion gi|758171|emb|CAA88765.1| succinate
dehydrogenase (cytochrome b560 subunit) [Cyanidium
caldarium]
Length = 132
Score = 36.2 bits (82), Expect = 0.32
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = -1
Query: 194 VSYIILFFFLFLIFL---YLFCFAIYGIIYEHLTMY*FSELRLFLSLIVCSIFS 42
+S + L FFLF++F +LFCF+ + +Y+ + F L F+ IV S++S
Sbjct: 29 LSGLYLVFFLFVLFCSIKFLFCFSTFWFVYKFVKTCFFFILSFFIVFIVFSMYS 82
>ref|NP_694903.1| NADH dehydrogenase subunit 2 [Brugia malayi]
gi|23307676|gb|AAN17804.1| NADH dehydrogenase subunit 2
[Brugia malayi]
Length = 281
Score = 35.8 bits (81), Expect = 0.42
Identities = 17/55 (30%), Positives = 30/55 (53%)
Frame = -1
Query: 206 FIVIVSYIILFFFLFLIFLYLFCFAIYGIIYEHLTMY*FSELRLFLSLIVCSIFS 42
F+V++++ FFFLFL F +FC+ + ++ L M F L++ +FS
Sbjct: 113 FVVLLNFCSDFFFLFLFFGMIFCYVHFFLLRNFLDMVVIGSTESFNWLLLLGMFS 167
>gb|EAA19369.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 85
Score = 34.7 bits (78), Expect = 0.94
Identities = 19/62 (30%), Positives = 40/62 (63%), Gaps = 2/62 (3%)
Frame = -1
Query: 206 FIVIVSYIILFFFLFLIFLYLFCFAIYGIIYEHLTMY*FSELRLFLSL--IVCSIFSAAM 33
+I+ + I +FFFLFL +++++ + +Y I+ + L Y F + L++ + ++ S+F AM
Sbjct: 16 YILCIYIIYIFFFLFL-YVHIYKYMLY-IVLDFLFNYIFVHISLYICILKLLHSLFKRAM 73
Query: 32 RR 27
R+
Sbjct: 74 RK 75
>pir||T31613 hypothetical protein Y50E8A.i - Caenorhabditis elegans
Length = 836
Score = 34.7 bits (78), Expect = 0.94
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = -1
Query: 206 FIVIVSYIILFFFLFLIF-----LYLFCFAIYGIIYEHLTMY*FSELRLFLSLI 60
FI I Y ILFFF++L F L++F F Y +Y + F LF+ +I
Sbjct: 781 FIFIYFYFILFFFIYLFFFKFFFLFIFIFYFYFYVYFYFNFNFFFFNLLFIIII 834
Score = 33.5 bits (75), Expect = 2.1
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -2
Query: 205 LLLLSLISYFFFFFF*FFFIYF 140
+L+L LI +FFFFFF +FF +F
Sbjct: 651 ILILILIFFFFFFFFFYFFFFF 672
Score = 32.0 bits (71), Expect = 6.1
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -2
Query: 205 LLLLSLISYFFFFFF*FFFIYF 140
L+L+ ++ +FFFFFF F+F +F
Sbjct: 650 LILILILIFFFFFFFFFYFFFF 671
Score = 32.0 bits (71), Expect = 6.1
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 205 LLLLSLISYFFFFFF*FFFIYF 140
+L+L LI FFFFFF FF+ +F
Sbjct: 649 ILILILILIFFFFFFFFFYFFF 670
>ref|NP_477686.1| wsv164 [shrimp white spot syndrome virus]
gi|17016562|gb|AAL33168.1| wsv164 [shrimp white spot
syndrome virus] gi|19481812|gb|AAL89088.1| WSSV220
[shrimp white spot syndrome virus]
Length = 64
Score = 34.3 bits (77), Expect = 1.2
Identities = 14/30 (46%), Positives = 22/30 (72%)
Frame = -2
Query: 214 LWSLLLLSLISYFFFFFF*FFFIYFALPFM 125
++++LL L+S FFFF F FF++F L F+
Sbjct: 3 VFNILLFFLLSIFFFFLFTLFFLFFPLLFL 32
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,992,548
Number of Sequences: 1393205
Number of extensions: 11625150
Number of successful extensions: 42029
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 35699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40484
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
