Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000918A_C02 KMC000918A_c02
(707 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_113427.1| hypothetical protein [Guillardia theta] gi|1258... 33 5.1
>ref|NP_113427.1| hypothetical protein [Guillardia theta] gi|12580678|emb|CAC26996.1|
hypothetical protein [Guillardia theta]
Length = 496
Score = 32.7 bits (73), Expect = 5.1
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -1
Query: 395 GTCNDSV*RYLNNSNSCMVTQ*FNSINSKGSRRKKKTKFG 276
GT +DSV Y++ +C V +N I++ G +RKK +FG
Sbjct: 267 GTTSDSVDSYISGGKNCNV---YNFIDTAGIKRKKSIEFG 303
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,904,463
Number of Sequences: 1393205
Number of extensions: 11792039
Number of successful extensions: 24857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24833
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
