Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000917A_C01 KMC000917A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566652.1| expressed protein; protein id: At3g19970.1, sup... 162 2e-39
gb|AAM61032.1| unknown [Arabidopsis thaliana] 110 1e-23
ref|NP_565432.1| Expressed protein; protein id: At2g18245.1, sup... 110 1e-23
dbj|BAB24300.1| unnamed protein product [Mus musculus] 62 7e-09
ref|NP_081113.1| RIKEN cDNA 1110038M16 [Mus musculus] gi|1283524... 62 7e-09
>ref|NP_566652.1| expressed protein; protein id: At3g19970.1, supported by cDNA:
gi_14532501 [Arabidopsis thaliana]
gi|11994772|dbj|BAB03162.1| gene_id:MZE19.2~unknown
protein [Arabidopsis thaliana]
gi|14532502|gb|AAK63979.1| AT3g19970/MZE19_2
[Arabidopsis thaliana]
Length = 434
Score = 162 bits (411), Expect = 2e-39
Identities = 76/108 (70%), Positives = 93/108 (85%)
Frame = -2
Query: 581 PAATEAALLLILKKFFEVILYLPTVNRRLSDVLSMLSSKQPSCPQLYMYSSADRVIPADS 402
PAATE ALLL+L+KFF VIL LP VNRRL+DVL LS+ QPSCPQLY+YSSADRVIP +
Sbjct: 319 PAATETALLLVLEKFFAVILNLPKVNRRLADVLDTLSTAQPSCPQLYIYSSADRVIPVEQ 378
Query: 401 VESFVEAQRRAGHDVRACNFVSSPHVDHFRNDPKLYTSQLSQFLEECV 258
VESF+ QR+AGH+VRACNF+SSPHVDHFR++P+LYT++L+ F+ V
Sbjct: 379 VESFIVEQRKAGHEVRACNFISSPHVDHFRSNPELYTAELNHFMNNFV 426
>gb|AAM61032.1| unknown [Arabidopsis thaliana]
Length = 398
Score = 110 bits (276), Expect = 1e-23
Identities = 51/107 (47%), Positives = 69/107 (63%)
Frame = -2
Query: 581 PAATEAALLLILKKFFEVILYLPTVNRRLSDVLSMLSSKQPSCPQLYMYSSADRVIPADS 402
P E +L L+K F + L P VN RL+ ++ L P CPQLY+YSS D+V+P+ S
Sbjct: 283 PLGIENIMLSSLEKLFPIFLNHPDVNTRLTKIIQKLYENHPPCPQLYLYSSGDKVVPSHS 342
Query: 401 VESFVEAQRRAGHDVRACNFVSSPHVDHFRNDPKLYTSQLSQFLEEC 261
VE + Q++ G + + NF SSPHVDH+RN P LY+SQL FL+EC
Sbjct: 343 VELRIREQQKIGRKIHSFNFKSSPHVDHYRNFPDLYSSQLQNFLQEC 389
>ref|NP_565432.1| Expressed protein; protein id: At2g18245.1, supported by cDNA:
108694. [Arabidopsis thaliana]
gi|20197808|gb|AAM15256.1| Expressed protein
[Arabidopsis thaliana]
Length = 398
Score = 110 bits (276), Expect = 1e-23
Identities = 51/107 (47%), Positives = 69/107 (63%)
Frame = -2
Query: 581 PAATEAALLLILKKFFEVILYLPTVNRRLSDVLSMLSSKQPSCPQLYMYSSADRVIPADS 402
P E +L L+K F + L P VN RL+ ++ L P CPQLY+YSS D+V+P+ S
Sbjct: 283 PLGIENIMLSSLEKLFPIFLNHPDVNTRLTKIIQKLYENHPPCPQLYLYSSGDKVVPSHS 342
Query: 401 VESFVEAQRRAGHDVRACNFVSSPHVDHFRNDPKLYTSQLSQFLEEC 261
VE + Q++ G + + NF SSPHVDH+RN P LY+SQL FL+EC
Sbjct: 343 VELRIREQQKIGRKIHSFNFKSSPHVDHYRNFPDLYSSQLQNFLQEC 389
>dbj|BAB24300.1| unnamed protein product [Mus musculus]
Length = 261
Score = 61.6 bits (148), Expect = 7e-09
Identities = 33/68 (48%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Frame = -2
Query: 458 SC-PQLYMYSSADRVIPADSVESFVEAQRRAGHDVRACNFVSSPHVDHFRNDPKLYTSQL 282
SC P+LY+YS AD+V+ A VE VEA+ VR +FVSS HV H R+ P YTS
Sbjct: 192 SCWPELYLYSRADKVVSARDVERMVEARLAHQVMVRGVDFVSSAHVSHLRDYPTYYTSLC 251
Query: 281 SQFLEECV 258
F+ CV
Sbjct: 252 VDFMHNCV 259
>ref|NP_081113.1| RIKEN cDNA 1110038M16 [Mus musculus] gi|12835245|dbj|BAB23200.1|
unnamed protein product [Mus musculus]
gi|18043377|gb|AAH19937.1| RIKEN cDNA 1110038M16 gene
[Mus musculus]
Length = 276
Score = 61.6 bits (148), Expect = 7e-09
Identities = 33/68 (48%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Frame = -2
Query: 458 SC-PQLYMYSSADRVIPADSVESFVEAQRRAGHDVRACNFVSSPHVDHFRNDPKLYTSQL 282
SC P+LY+YS AD+V+ A VE VEA+ VR +FVSS HV H R+ P YTS
Sbjct: 207 SCWPELYLYSRADKVVSARDVERMVEARLAHQVMVRGVDFVSSAHVSHLRDYPTYYTSLC 266
Query: 281 SQFLEECV 258
F+ CV
Sbjct: 267 VDFMHNCV 274
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,237,790
Number of Sequences: 1393205
Number of extensions: 9261827
Number of successful extensions: 22170
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 21686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22161
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
