Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000914A_C01 KMC000914A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL96711.2| similar to Arabidopsis thaliana (Mouse-ear cress)... 35 0.92
ref|NP_059365.1| haem lyase [Cyanidioschyzon merolae] gi|7432719... 34 1.6
gb|AAA62273.1| ORF2 34 1.6
gb|ZP_00005599.1| hypothetical protein [Rhodobacter sphaeroides] 32 4.5
ref|NP_662063.1| hypothetical protein [Chlorobium tepidum TLS] g... 32 5.9
>gb|AAL96711.2| similar to Arabidopsis thaliana (Mouse-ear cress). Hypothetical
80.1 kDa protein [Dictyostelium discoideum]
Length = 839
Score = 34.7 bits (78), Expect = 0.92
Identities = 20/45 (44%), Positives = 20/45 (44%)
Frame = +2
Query: 83 NHNLKTTNSNPSNPDKNNPNTK*IKT*PK*HVSQIQTSLNQPQPQ 217
NHN T N N N KNN N IKT P Q Q Q PQ
Sbjct: 682 NHNYTTMNGNNENDCKNNNNNNNIKTIPNEGQQQPQQQPQQQPPQ 726
>ref|NP_059365.1| haem lyase [Cyanidioschyzon merolae] gi|7432719|pir||A58932
cytochrome C-type biogenesis protein CCMF -
Cyanidioschyzon merolae mitochondrion
gi|4115789|dbj|BAA36527.1| cytochrome C-type biogenesis
protein CCMF [Cyanidioschyzon merolae]
Length = 620
Score = 33.9 bits (76), Expect = 1.6
Identities = 15/49 (30%), Positives = 30/49 (60%)
Frame = -2
Query: 171 YLGYVFIYLVLGLFLSGLLGLLFVVFKLWFFFHVYFIVSIMCIVSELVL 25
+LGY +++ F++ + L ++ KL FF++VYFI+ + +S +L
Sbjct: 100 FLGYFLQFIIYFTFINYFINKLTLIVKLTFFYNVYFILFNISFLSLTLL 148
>gb|AAA62273.1| ORF2
Length = 141
Score = 33.9 bits (76), Expect = 1.6
Identities = 27/105 (25%), Positives = 40/105 (37%)
Frame = -1
Query: 580 LILLSFLFFCFPIICFYLCDCLII*IMLFYYTI*VVIAIYCFKYKGLFGML**DWSMKFS 401
L + ++CF I ++ CD +I+ I FY+ V+ +YC Y
Sbjct: 50 LFWVVIFYWCFDCIVYFFCDVIILFIFFFYF---VLCFLYCCFY---------------- 90
Query: 400 ML*LYTLSFFP*MVCSS*FFVAYFFSKLS*TLFTLKLTTILLFLF 266
L L FF C +F+ YF L + LFLF
Sbjct: 91 ---LVCLVFFCIFCCVLCYFLIYF-------LCCFLFWVVFLFLF 125
>gb|ZP_00005599.1| hypothetical protein [Rhodobacter sphaeroides]
Length = 297
Score = 32.3 bits (72), Expect = 4.5
Identities = 25/93 (26%), Positives = 42/93 (44%)
Frame = -1
Query: 478 VVIAIYCFKYKGLFGML**DWSMKFSML*LYTLSFFP*MVCSS*FFVAYFFSKLS*TLFT 299
+V+ +Y F KG +G + +S + L+T F V + +A F+ + +L T
Sbjct: 31 LVVLVYSFLVKGQYGGVIWTFSTEAWFEVLFTRDIFSDEVTLADAHLAIFWRSVKLSLMT 90
Query: 298 LKLTTILLFLFQWVLVTKPE*QGRSHPLWLGLI 200
+T + F W + T+P LWL LI
Sbjct: 91 TAITFAVGFPTAWFIATRPP---NRRALWLFLI 120
>ref|NP_662063.1| hypothetical protein [Chlorobium tepidum TLS]
gi|21647144|gb|AAM72405.1| hypothetical protein
[Chlorobium tepidum TLS]
Length = 59
Score = 32.0 bits (71), Expect = 5.9
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = -2
Query: 159 VFIYLVLGLFLSGLLGLLFVVFKLWFFFHVYFIVSIMCI 43
+FI+ ++ +F+ LL L VV+ WFF+ YF VS++ +
Sbjct: 5 MFIFFIVFVFICRLLLLFCVVY--WFFYCFYFNVSVLIL 41
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,611,702
Number of Sequences: 1393205
Number of extensions: 9885960
Number of successful extensions: 39116
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36835
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
