>KMC000912A_C01 KMC000912A_c01
tgtttaaattattctggtcctttccgattttaaaaaattacaccctctttcccgtggatc
cttagacacttaaattcattTTAATGAAATCAAACATCCAGAGACCTTCTCTTTTTACAT
TTTTATTTTCTAAGATGCTAAGAAAAATAGTTTATAGTTGCTCATCATTACTAAGAAGGT
TCATATACAATGATATGTAGTACATTTTACCTAGCAGGAGAAAGAGGATAATGCAATTTT
AAGTATCAACCACAGGAGAACTGTAATTTTTAAAAAAGGTAATTTATCCATCTAAACTTT
CCCGACAGGGAAAAAATAGGGGGGGGGGGGGGGGGGAG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000912A_C01 KMC000912A_c01
         (338 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_045393.1| conserved hypothetical protein [Borrelia burgdo...    31  4.6

>ref|NP_045393.1| conserved hypothetical protein [Borrelia burgdorferi]
           gi|7463120|pir||E70222 conserved hypothetical protein
           BBD09 - Lyme disease spirochete plasmid D/lp17
           gi|1655793|gb|AAB38554.1| CdsF [Borrelia burgdorferi]
           gi|2689939|gb|AAC66353.1| conserved hypothetical protein
           [Borrelia burgdorferi B31]
          Length = 227

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 211 GKMYYISLYMNLLSNDEQL*TIFLSILENKNVKREGLWM 95
           G+ Y+I  Y N+   D+ L TI +S  E  N  REGL++
Sbjct: 173 GRPYFIFYYDNIDDKDKNLKTILISFEEFHNGIREGLFL 211

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 313,760,625
Number of Sequences: 1393205
Number of extensions: 6236466
Number of successful extensions: 46959
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33876
length of database: 448,689,247
effective HSP length: 88
effective length of database: 326,087,207
effective search space used: 7826092968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 GENLf044d10 BP064669 1 338 2 MPDL082a01_f AV780741 133 290

---