Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000908A_C01 KMC000908A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65141.1| unknown [Arabidopsis thaliana] 58 8e-17
ref|NP_566924.1| expressed protein; protein id: At3g49720.1, sup... 55 1e-16
gb|AAL24420.1| Unknown protein [Arabidopsis thaliana] gi|2138702... 55 1e-16
ref|NP_569020.1| putative protein; protein id: At5g65810.1, supp... 58 2e-16
dbj|BAB16471.1| P0019D06.30 [Oryza sativa (japonica cultivar-gro... 56 3e-16
>gb|AAM65141.1| unknown [Arabidopsis thaliana]
Length = 258
Score = 58.2 bits (139), Expect(2) = 8e-17
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = -2
Query: 402 WKQIFAEASLEENEASVKKFEEAASKMSYAPSCQIFHL 289
W + F++ +LEENEA+ KKFE+AASK SY P+CQ+FHL
Sbjct: 217 WIRFFSQTNLEENEAASKKFEQAASKSSYKPACQVFHL 254
Score = 49.7 bits (117), Expect(2) = 8e-17
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = -1
Query: 505 DGVVIFTGYLGQRRAKVAQLSKFGRPAKMRSSS 407
DGVV+ G GQ++AK A+LSKFGRPAKMRSSS
Sbjct: 183 DGVVLLAGNPGQQKAKGAELSKFGRPAKMRSSS 215
>ref|NP_566924.1| expressed protein; protein id: At3g49720.1, supported by cDNA:
35598. [Arabidopsis thaliana] gi|11285664|pir||T46038
hypothetical protein T16K5.70 - Arabidopsis thaliana
gi|6723417|emb|CAB66910.1| hypothetical protein
[Arabidopsis thaliana] gi|21593048|gb|AAM64997.1|
unknown [Arabidopsis thaliana]
Length = 261
Score = 55.1 bits (131), Expect(2) = 1e-16
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = -1
Query: 505 DGVVIFTGYLGQRRAKVAQLSKFGRPAKMRSSS 407
DGVV+F G GQ+RAKVA+LSKFGRPAKMRS+S
Sbjct: 186 DGVVLFAGLPGQQRAKVAELSKFGRPAKMRSAS 218
Score = 52.4 bits (124), Expect(2) = 1e-16
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = -2
Query: 402 WKQIFAEASLEENEASVKKFEEAASKMSYAPSCQIFHL 289
W + F + +LEEN+A KKFE+A SK Y P+CQ+FHL
Sbjct: 220 WNRFFVQTNLEENDAPSKKFEQAVSKGLYKPACQVFHL 257
>gb|AAL24420.1| Unknown protein [Arabidopsis thaliana] gi|21387025|gb|AAM47916.1|
unknown protein [Arabidopsis thaliana]
Length = 171
Score = 55.1 bits (131), Expect(2) = 1e-16
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = -1
Query: 505 DGVVIFTGYLGQRRAKVAQLSKFGRPAKMRSSS 407
DGVV+F G GQ+RAKVA+LSKFGRPAKMRS+S
Sbjct: 96 DGVVLFAGLPGQQRAKVAELSKFGRPAKMRSAS 128
Score = 52.4 bits (124), Expect(2) = 1e-16
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = -2
Query: 402 WKQIFAEASLEENEASVKKFEEAASKMSYAPSCQIFHL 289
W + F + +LEEN+A KKFE+A SK Y P+CQ+FHL
Sbjct: 130 WNRFFVQTNLEENDAPSKKFEQAVSKGLYKPACQVFHL 167
>ref|NP_569020.1| putative protein; protein id: At5g65810.1, supported by cDNA:
36946. [Arabidopsis thaliana]
Length = 258
Score = 58.2 bits (139), Expect(2) = 2e-16
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = -2
Query: 402 WKQIFAEASLEENEASVKKFEEAASKMSYAPSCQIFHL 289
W + F++ +LEENEA+ KKFE+AASK SY P+CQ+FHL
Sbjct: 217 WIRFFSQTNLEENEAASKKFEQAASKSSYKPACQVFHL 254
Score = 48.1 bits (113), Expect(2) = 2e-16
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = -1
Query: 505 DGVVIFTGYLGQRRAKVAQLSKFGRPAKMRSSS 407
DGVV+ G GQ++AK +LSKFGRPAKMRSSS
Sbjct: 183 DGVVLLAGNPGQQKAKGGELSKFGRPAKMRSSS 215
>dbj|BAB16471.1| P0019D06.30 [Oryza sativa (japonica cultivar-group)]
gi|13486897|dbj|BAB40126.1| P0024G09.18 [Oryza sativa
(japonica cultivar-group)]
Length = 258
Score = 55.8 bits (133), Expect(2) = 3e-16
Identities = 24/40 (60%), Positives = 28/40 (70%)
Frame = -2
Query: 402 WKQIFAEASLEENEASVKKFEEAASKMSYAPSCQIFHLSS 283
W + F + L ENE +KKFE+AASK Y P CQIFHLSS
Sbjct: 219 WSRYFIQTGLRENEGPLKKFEQAASKNKYKPDCQIFHLSS 258
Score = 50.1 bits (118), Expect(2) = 3e-16
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = -1
Query: 505 DGVVIFTGYLGQRRAKVAQLSKFGRPAKMRSSS 407
DG+VIF G GQ++AKV++L KFGRPAK+RSSS
Sbjct: 185 DGLVIFAGNPGQQKAKVSELPKFGRPAKLRSSS 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,467,015
Number of Sequences: 1393205
Number of extensions: 7290512
Number of successful extensions: 14832
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14791
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
