Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000906A_C01 KMC000906A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF09254.1|AF201456_1 NAC2 [Arabidopsis thaliana] 43 0.003
ref|NP_196061.1| putative protein; protein id: At5g04410.1, supp... 43 0.003
gb|AAO72552.1| NAC-like protein [Oryza sativa (japonica cultivar... 40 0.022
ref|NP_064813.1| Hypothetical protein [Amsacta moorei entomopoxv... 32 4.5
gb|AAN46238.1| unknown protein [Arabidopsis thaliana] 32 4.5
>gb|AAF09254.1|AF201456_1 NAC2 [Arabidopsis thaliana]
Length = 569
Score = 42.7 bits (99), Expect = 0.003
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -1
Query: 589 SSNTTHI-AGMISITDITLRGNA-MDWMVGKNGGFNATIMSSGFSQSDFNSDSLMPISDL 416
SS + H+ AGM+ I+++TL ++ M W KNG N + Q D + S
Sbjct: 481 SSGSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLNVVLSFGVVQQDDAMTAS------- 533
Query: 415 VSSKTTCVLSHGCLYLMGFSVLILSLSFKI 326
SKT + L M VL+LS+SFKI
Sbjct: 534 -GSKTGITATRAMLVFMCLWVLLLSVSFKI 562
>ref|NP_196061.1| putative protein; protein id: At5g04410.1, supported by cDNA:
gi_20466285, supported by cDNA: gi_6456750 [Arabidopsis
thaliana] gi|11358327|pir||T48437 hypothetical protein
T32M21.10 - Arabidopsis thaliana
gi|7406445|emb|CAB85547.1| putative protein [Arabidopsis
thaliana] gi|20466286|gb|AAM20460.1| putative protein
[Arabidopsis thaliana] gi|22136362|gb|AAM91259.1|
putative protein [Arabidopsis thaliana]
Length = 567
Score = 42.7 bits (99), Expect = 0.003
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -1
Query: 589 SSNTTHI-AGMISITDITLRGNA-MDWMVGKNGGFNATIMSSGFSQSDFNSDSLMPISDL 416
SS + H+ AGM+ I+++TL ++ M W KNG N + Q D + S
Sbjct: 479 SSGSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLNVVLSFGVVQQDDAMTAS------- 531
Query: 415 VSSKTTCVLSHGCLYLMGFSVLILSLSFKI 326
SKT + L M VL+LS+SFKI
Sbjct: 532 -GSKTGITATRAMLVFMCLWVLLLSVSFKI 560
>gb|AAO72552.1| NAC-like protein [Oryza sativa (japonica cultivar-group)]
Length = 507
Score = 40.0 bits (92), Expect = 0.022
Identities = 32/94 (34%), Positives = 49/94 (52%)
Frame = -1
Query: 589 SSNTTHIAGMISITDITLRGNAMDWMVGKNGGFNATIMSSGFSQSDFNSDSLMPISDLVS 410
SS+ AG+I + IT G+ + KNG FN ++ S + D ++ S+ D
Sbjct: 418 SSSIRVTAGIIQLGGITFTGSTEH--LQKNGDFN--LLLSFTVEGDVSTKSIGFEPDTQM 473
Query: 409 SKTTCVLSHGCLYLMGFSVLILSLSFKIGSYMYT 308
S T VL G +YL S +IL LS+K+G +Y+
Sbjct: 474 STTPMVLRSG-MYLFFVSAMILMLSYKVGLCIYS 506
>ref|NP_064813.1| Hypothetical protein [Amsacta moorei entomopoxvirus]
gi|9944554|gb|AAG02737.1|AF250284_31 AMV031 [Amsacta
moorei entomopoxvirus]
Length = 151
Score = 32.3 bits (72), Expect = 4.5
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Frame = -1
Query: 253 RILFCVVDRAHFMIRIP*TCRFLCGSLV---ILIYTFIVTYSPLHTFFVSECQLRV-TRS 86
+++ V+D ++ I LCG + I+I TFI+ Y P T ++ +++ T S
Sbjct: 57 KLIIIVIDNVILLLSIFINLILLCGIYLDNKIIIKTFILIYIPCVTLYMILTFIKIYTYS 116
Query: 85 LIQF-LVYII--IIINY 44
++ F ++YII IIIN+
Sbjct: 117 MVYFEMIYIIIKIIINF 133
>gb|AAN46238.1| unknown protein [Arabidopsis thaliana]
Length = 358
Score = 32.3 bits (72), Expect = 4.5
Identities = 19/48 (39%), Positives = 29/48 (59%), Gaps = 2/48 (4%)
Frame = -1
Query: 589 SSNTTHI-AGMISITDITLRGNA-MDWMVGKNGGFNATIMSSGFSQSD 452
SS + H+ AGM+ I+++TL ++ M W KNG N ++S G Q D
Sbjct: 302 SSGSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLN-VVLSFGVVQQD 348
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,297,767
Number of Sequences: 1393205
Number of extensions: 9438537
Number of successful extensions: 22306
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22298
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
