Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000904A_C01 KMC000904A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62926.1| cinnamoyl CoA reductase-like protein [Arabidopsis... 88 6e-17
ref|NP_196974.1| cinnamoyl CoA reductase - like protein; protein... 88 6e-17
dbj|BAB63782.1| putative cinnamoyl CoA reductase [Oryza sativa (... 82 6e-15
gb|AAM62641.1| cinnamoyl-CoA reductase-like protein [Arabidopsis... 65 6e-10
ref|NP_194776.1| cinnamoyl-CoA reductase - like protein; protein... 65 6e-10
>gb|AAM62926.1| cinnamoyl CoA reductase-like protein [Arabidopsis thaliana]
Length = 368
Score = 88.2 bits (217), Expect = 6e-17
Identities = 46/104 (44%), Positives = 74/104 (70%), Gaps = 6/104 (5%)
Frame = -2
Query: 562 IAYLKGAQEIYSNGLLATVDLKKVVEAHSSVFKAM-NNNACGRYICFDNVIGTQSEAENL 386
+AYLKGA+E+YSNGLLAT+D+ ++ +AH +++ + N A GRYICFD ++ ++ AE L
Sbjct: 260 LAYLKGAKEMYSNGLLATMDVNRLAKAHVCLWEGLGNKTAFGRYICFDTIL-SRDGAEKL 318
Query: 385 AKEIGMPKEKICGDESNNSLH-----RFELSNEKLCRLMSRPIR 269
AK+I + EKICG+ +++ + ++S++KL LMSR +R
Sbjct: 319 AKDIDVQIEKICGNSNDSDANTETEASLQISDKKLLDLMSRTLR 362
>ref|NP_196974.1| cinnamoyl CoA reductase - like protein; protein id: At5g14700.1,
supported by cDNA: 17229., supported by cDNA:
gi_15810354, supported by cDNA: gi_20259644 [Arabidopsis
thaliana] gi|11357226|pir||T48643 cinnamoyl CoA
reductase-like protein - Arabidopsis thaliana
gi|7573319|emb|CAB87637.1| cinnamoyl CoA reductase-like
protein [Arabidopsis thaliana]
gi|15810355|gb|AAL07065.1| putative cinnamoyl CoA
reductase [Arabidopsis thaliana]
gi|20259645|gb|AAM14340.1| putative cinnamoyl CoA
reductase [Arabidopsis thaliana]
Length = 368
Score = 88.2 bits (217), Expect = 6e-17
Identities = 46/104 (44%), Positives = 74/104 (70%), Gaps = 6/104 (5%)
Frame = -2
Query: 562 IAYLKGAQEIYSNGLLATVDLKKVVEAHSSVFKAM-NNNACGRYICFDNVIGTQSEAENL 386
+AYLKGA+E+YSNGLLAT+D+ ++ +AH +++ + N A GRYICFD ++ ++ AE L
Sbjct: 260 LAYLKGAKEMYSNGLLATMDVNRLAKAHVCLWEGLGNKTAFGRYICFDTIL-SRDGAEKL 318
Query: 385 AKEIGMPKEKICGDESNNSLH-----RFELSNEKLCRLMSRPIR 269
AK+I + EKICG+ +++ + ++S++KL LMSR +R
Sbjct: 319 AKDIDVQIEKICGNSNDSDANTETEASLQISDKKLLDLMSRTLR 362
>dbj|BAB63782.1| putative cinnamoyl CoA reductase [Oryza sativa (japonica
cultivar-group)]
Length = 379
Score = 81.6 bits (200), Expect = 6e-15
Identities = 44/103 (42%), Positives = 65/103 (62%), Gaps = 4/103 (3%)
Frame = -2
Query: 562 IAYLKGAQEIYSNGLLATVDLKKVVEAHSSVFKAM-NNNACGRYICFDNVIGTQSEAENL 386
IAYLKGA+ + ++GLLAT ++ V EAH V++AM +N A GRYIC+D+V+ E L
Sbjct: 266 IAYLKGARAMLADGLLATASVETVAEAHVRVYEAMGDNTAGGRYICYDHVVKRPEEFAEL 325
Query: 385 AKEIGMPKE---KICGDESNNSLHRFELSNEKLCRLMSRPIRC 266
+++G+P+ +S + RF+L +KL RLMS RC
Sbjct: 326 ERQLGIPRRAAAAAAAQDSGDRPARFDLCRQKLARLMSTRRRC 368
>gb|AAM62641.1| cinnamoyl-CoA reductase-like protein [Arabidopsis thaliana]
Length = 303
Score = 65.1 bits (157), Expect = 6e-10
Identities = 36/103 (34%), Positives = 60/103 (57%), Gaps = 4/103 (3%)
Frame = -2
Query: 562 IAYLKGAQEIYSNGLLATVDLKKVVEAHSSVFKAMNNNACGRYICFDNVIGTQSEA---- 395
++YLKGA ++Y NG+LA VD+K + + H F+ + +ACGRY CF+ ++ T+ EA
Sbjct: 204 MSYLKGAAQMYENGVLAYVDVKFLADVHIRAFEDV--SACGRYFCFNQIVNTEEEALKLV 261
Query: 394 ENLAKEIGMPKEKICGDESNNSLHRFELSNEKLCRLMSRPIRC 266
E+L+ I MP + + + ++ L N KL +L+ C
Sbjct: 262 ESLSPLIPMP-PRYENEMHGSEVYEERLRNNKLSKLVEAGSAC 303
>ref|NP_194776.1| cinnamoyl-CoA reductase - like protein; protein id: At4g30470.1,
supported by cDNA: 150515., supported by cDNA:
gi_14596196 [Arabidopsis thaliana]
gi|25407644|pir||D85356 cinnamoyl-CoA reductase-like
protein [imported] - Arabidopsis thaliana
gi|7269948|emb|CAB79765.1| cinnamoyl-CoA reductase-like
protein [Arabidopsis thaliana]
gi|14596197|gb|AAK68826.1| cinnamoyl-CoA reductase-like
protein [Arabidopsis thaliana]
gi|24899703|gb|AAN65066.1| cinnamoyl-CoA reductase-like
protein [Arabidopsis thaliana]
Length = 303
Score = 65.1 bits (157), Expect = 6e-10
Identities = 36/103 (34%), Positives = 60/103 (57%), Gaps = 4/103 (3%)
Frame = -2
Query: 562 IAYLKGAQEIYSNGLLATVDLKKVVEAHSSVFKAMNNNACGRYICFDNVIGTQSEA---- 395
++YLKGA ++Y NG+LA VD+K + + H F+ + +ACGRY CF+ ++ T+ EA
Sbjct: 204 MSYLKGAAQMYENGVLAYVDVKFLADVHIRAFEDV--SACGRYFCFNQIVNTEEEALKLV 261
Query: 394 ENLAKEIGMPKEKICGDESNNSLHRFELSNEKLCRLMSRPIRC 266
E+L+ I MP + + + ++ L N KL +L+ C
Sbjct: 262 ESLSPLIPMP-PRYENEMHGSEVYEERLRNNKLSKLVEAGSAC 303
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,610,619
Number of Sequences: 1393205
Number of extensions: 8866175
Number of successful extensions: 22218
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 21496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22170
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
