Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000902A_C03 KMC000902A_c03
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA76360.1| aconitate hydratase [Piromyces sp. E2] 34 1.4
ref|NP_003692.1| tumor necrosis factor ligand superfamily, membe... 34 1.8
dbj|BAA97257.1| receptor activator of NF-kB ligand 2 [Mus musculus] 34 1.8
gb|EAA28770.1| hypothetical protein [Neurospora crassa] 33 3.1
dbj|BAB71768.1| hRANKL 2 [Homo sapiens] gi|18143621|dbj|BAB79695... 33 4.1
>emb|CAA76360.1| aconitate hydratase [Piromyces sp. E2]
Length = 755
Score = 34.3 bits (77), Expect = 1.4
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = -2
Query: 598 PLTPSLLE--GTHSDNVKLCGWTFKVKHQLVASCTN-----MCKFLFLLFVGQSYTLAHE 440
P TP L + V+ GW ++K L+ SCTN MC+ L+ + +
Sbjct: 325 PFTPDLATPLSEFKNAVEKNGWPEELKVGLIGSCTNSSYEDMCRVSSLIKQALDNGVPAK 384
Query: 439 KRFVVTPGSK 410
+F++TPGS+
Sbjct: 385 SKFIITPGSE 394
>ref|NP_003692.1| tumor necrosis factor ligand superfamily, member 11, isoform 1;
receptor activator of nuclear factor kappa B ligand;
TNF-related activation-induced cytokine; osteoclast
differentiation factor; osteoprotegerin ligand [Homo
sapiens] gi|12643360|sp|O14788|TN11_HUMAN Tumor necrosis
factor ligand superfamily member 11 (Receptor activator
of nuclear factor kappa B ligand) (RANKL) (TNF-related
activation-induced cytokine) (TRANCE) (Osteoprotegerin
ligand) (OPGL) (Osteoclast differentiation factor) (ODF)
gi|2612922|gb|AAB86811.1| RANKL [Homo sapiens]
gi|3057146|gb|AAC39731.1| osteoprotegerin ligand [Homo
sapiens] gi|18143619|dbj|BAB79694.1| receptor activator
of nuclear factor kappa B ligand 1 [Homo sapiens]
Length = 317
Score = 33.9 bits (76), Expect = 1.8
Identities = 15/49 (30%), Positives = 29/49 (58%)
Frame = -3
Query: 273 SKFLLLLGAPMLLILCPLAVLFFFRFTIMYDLVILKFWHCIFSLWKVHE 127
S F+ LLG + ++C +A+ F+FR + + + HCI+ + ++HE
Sbjct: 47 SMFVALLGLGLGQVVCSVALFFYFRAQMDPNRISEDGTHCIYRILRLHE 95
>dbj|BAA97257.1| receptor activator of NF-kB ligand 2 [Mus musculus]
Length = 287
Score = 33.9 bits (76), Expect = 1.8
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -3
Query: 285 PENPSKFLLLLGAPMLLILCPLAVLFFFRFTIMYDLVILKFWHCIFSLWKVHE 127
P + S FL LLG + ++C +A+ +FR + + + HC + + ++HE
Sbjct: 15 PASRSMFLALLGLGLGQVVCSIALFLYFRAQMDPNRISEDSTHCFYRILRLHE 67
>gb|EAA28770.1| hypothetical protein [Neurospora crassa]
Length = 388
Score = 33.1 bits (74), Expect = 3.1
Identities = 21/57 (36%), Positives = 31/57 (53%)
Frame = +1
Query: 193 SKTKKKEHG*GAQYEQHGCTQKKKKFRRVLWSPPSFICSSSQYANAPLPRNQISSSS 363
+K +KK HG A HG Q +K+ ++ + PS S+S A PLP + S+SS
Sbjct: 32 TKKQKKSHGSSAHGHGHGPAQHQKQKQQS--TKPSRSASASSAAPPPLPSSSSSTSS 86
>dbj|BAB71768.1| hRANKL 2 [Homo sapiens] gi|18143621|dbj|BAB79695.1| receptor
activator of nuclear factor kappa B ligand 2-2 [Homo
sapiens]
Length = 270
Score = 32.7 bits (73), Expect = 4.1
Identities = 14/47 (29%), Positives = 28/47 (58%)
Frame = -3
Query: 267 FLLLLGAPMLLILCPLAVLFFFRFTIMYDLVILKFWHCIFSLWKVHE 127
F+ LLG + ++C +A+ F+FR + + + HCI+ + ++HE
Sbjct: 2 FVALLGLGLGQVVCSVALFFYFRAQMDPNRISEDGTHCIYRILRLHE 48
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,287,433
Number of Sequences: 1393205
Number of extensions: 13027667
Number of successful extensions: 30998
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 30101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30987
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
