Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000900A_C01 KMC000900A_c01
(434 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO15918.1| BC1 protein [Tomato yellow leaf curl virus] gi|27... 31 3.1
gb|AAM94640.1| flavohemoglobin [Giardia intestinalis] gi|2924504... 31 4.0
ref|NP_049922.1| BC1 protein [Tomato yellow leaf curl Thailand v... 30 5.2
>gb|AAO15918.1| BC1 protein [Tomato yellow leaf curl virus]
gi|27463735|gb|AAO15920.1| BC1 protein [Tomato yellow
leaf curl virus]
Length = 277
Score = 31.2 bits (69), Expect = 3.1
Identities = 23/72 (31%), Positives = 31/72 (42%), Gaps = 13/72 (18%)
Frame = -2
Query: 418 NLNIHYYSLLSSSFPYTVPNDWRIL-------------LSRLKGKVV*SLLQHSVNLMFT 278
N NIHYYS SS F PN WR+L R++GK+ S + S + F
Sbjct: 94 NCNIHYYS--SSYFSPKDPNPWRVLYRVDDTNVVNGVHFCRMQGKLKMSSAKQSSEITFK 151
Query: 277 VVNHIICTTLLN 242
+I + N
Sbjct: 152 SPKIVILSKAYN 163
>gb|AAM94640.1| flavohemoglobin [Giardia intestinalis] gi|29245048|gb|EAA36712.1|
GLP_20_10883_9507 [Giardia lamblia ATCC 50803]
Length = 458
Score = 30.8 bits (68), Expect = 4.0
Identities = 11/24 (45%), Positives = 18/24 (74%)
Frame = -1
Query: 194 IKRLNKMYEIDGMSIPLPPAFRAE 123
I+R+N++YE+ G +P+PP AE
Sbjct: 69 IRRINELYELKGKGLPVPPEHWAE 92
>ref|NP_049922.1| BC1 protein [Tomato yellow leaf curl Thailand virus]
gi|5070459|gb|AAD39160.1|AF141897_3 BC1 protein [Tomato
yellow leaf curl Thailand virus-[2]]
Length = 237
Score = 30.4 bits (67), Expect = 5.2
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 418 NLNIHYYSLLSSSFPYTVPNDWRIL 344
N NIHYYS SS F PN WR+L
Sbjct: 54 NCNIHYYS--SSYFSPKDPNPWRVL 76
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 326,585,430
Number of Sequences: 1393205
Number of extensions: 5938472
Number of successful extensions: 13178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13176
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
