Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000898A_C01 KMC000898A_c01
(729 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565946.1| bZIP family transcription factor; protein id: A... 105 5e-22
gb|AAM96961.1| putative TGACG-sequence-specific bZIP DNA-binding... 105 5e-22
ref|NP_191225.1| bZIP family transcription factor; protein id: A... 82 8e-15
emb|CAD12033.1| AtbZIP transcription factor [Arabidopsis thaliana] 79 5e-14
gb|AAO00862.1| putative bZIP transcription factor [Arabidopsis t... 79 5e-14
>ref|NP_565946.1| bZIP family transcription factor; protein id: At2g40950.1
[Arabidopsis thaliana] gi|20196934|gb|AAB86455.2| bZIP
family transcription factor [Arabidopsis thaliana]
Length = 721
Score = 105 bits (263), Expect = 5e-22
Identities = 56/90 (62%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Frame = -3
Query: 727 RILHGPSDPLPGSSLNLTEDHVRNSQKDHLHGNKSSMVVSVLFDPKEAGDAHVDGMMA-P 551
RIL G PLPGS NLT++H RNS + SSMVVSVL DP+E GD +DGM+ P
Sbjct: 628 RILRGLPIPLPGSDFNLTKEHQRNSSSKEIKP-ASSMVVSVLVDPREGGDGDIDGMIGGP 686
Query: 550 KSLSRIFVVVLMDSVKYVTYSCGLPRASPP 461
KSLSR+FVVVL+DS KYVTYSC LPR+ P
Sbjct: 687 KSLSRVFVVVLLDSAKYVTYSCVLPRSGAP 716
>gb|AAM96961.1| putative TGACG-sequence-specific bZIP DNA-binding protein
[Arabidopsis thaliana] gi|23198400|gb|AAN15727.1|
putative TGACG-sequence-specific bZIP DNA-binding
protein [Arabidopsis thaliana]
Length = 721
Score = 105 bits (263), Expect = 5e-22
Identities = 56/90 (62%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Frame = -3
Query: 727 RILHGPSDPLPGSSLNLTEDHVRNSQKDHLHGNKSSMVVSVLFDPKEAGDAHVDGMMA-P 551
RIL G PLPGS NLT++H RNS + SSMVVSVL DP+E GD +DGM+ P
Sbjct: 628 RILRGLPIPLPGSDFNLTKEHQRNSSSKEIKP-ASSMVVSVLVDPREGGDGDIDGMIGGP 686
Query: 550 KSLSRIFVVVLMDSVKYVTYSCGLPRASPP 461
KSLSR+FVVVL+DS KYVTYSC LPR+ P
Sbjct: 687 KSLSRVFVVVLLDSAKYVTYSCVLPRSGAP 716
>ref|NP_191225.1| bZIP family transcription factor; protein id: At3g56660.1
[Arabidopsis thaliana] gi|11288401|pir||T49067
transcription factor-like protein - Arabidopsis thaliana
gi|7594544|emb|CAB88069.1| transcription factor-like
protein [Arabidopsis thaliana]
Length = 620
Score = 82.0 bits (201), Expect = 8e-15
Identities = 48/92 (52%), Positives = 58/92 (62%), Gaps = 3/92 (3%)
Frame = -3
Query: 727 RILHGPSDPLPGSSLNLTEDHVRNSQKDHLHGNKS--SMVVSVLFDPKEAGDAHVDGMMA 554
RIL G LP S NLT++ +S KD K SMVVSVL DP+E G+ +DGMM
Sbjct: 527 RILSGG---LPVSDFNLTKEDHNSSSKDKFRETKPGPSMVVSVLVDPREGGNGDIDGMMG 583
Query: 553 -PKSLSRIFVVVLMDSVKYVTYSCGLPRASPP 461
K SR+F+VVL+D VKY+TYSC LPR P
Sbjct: 584 GTKPQSRVFIVVLVDGVKYITYSCVLPRPDVP 615
>emb|CAD12033.1| AtbZIP transcription factor [Arabidopsis thaliana]
Length = 326
Score = 79.3 bits (194), Expect = 5e-14
Identities = 50/95 (52%), Positives = 61/95 (63%), Gaps = 9/95 (9%)
Frame = -3
Query: 727 RILHGPSDPLPGSSLNLTEDHV-RNSQKDHLHGN------KSSMVVSVLFDPKEAGDAHV 569
RIL G L S LN+T +++Q +GN SSMVVSVL DP+E D+
Sbjct: 225 RILEGLPVSLVASELNITGTQPNKDAQNKTFNGNTNKPTSSSSMVVSVLLDPREVVDSET 284
Query: 568 DGMMAP--KSLSRIFVVVLMDSVKYVTYSCGLPRA 470
D ++ P KSLSRIFVVVL+DSVKYVTYSC LPR+
Sbjct: 285 DRVVPPNPKSLSRIFVVVLLDSVKYVTYSCVLPRS 319
>gb|AAO00862.1| putative bZIP transcription factor [Arabidopsis thaliana]
Length = 675
Score = 79.3 bits (194), Expect = 5e-14
Identities = 50/95 (52%), Positives = 61/95 (63%), Gaps = 9/95 (9%)
Frame = -3
Query: 727 RILHGPSDPLPGSSLNLTEDHV-RNSQKDHLHGN------KSSMVVSVLFDPKEAGDAHV 569
RIL G L S LN+T +++Q +GN SSMVVSVL DP+E D+
Sbjct: 574 RILEGLPVSLVASELNITGTQPNKDAQNKTFNGNTNKPTSSSSMVVSVLLDPREVVDSET 633
Query: 568 DGMMAP--KSLSRIFVVVLMDSVKYVTYSCGLPRA 470
D ++ P KSLSRIFVVVL+DSVKYVTYSC LPR+
Sbjct: 634 DRVVPPNPKSLSRIFVVVLLDSVKYVTYSCVLPRS 668
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,457,705
Number of Sequences: 1393205
Number of extensions: 12733024
Number of successful extensions: 25692
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25673
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
