Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000892A_C05 KMC000892A_c05
(778 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_347399.1| Transcriptional regulator, MarR family [Clostri... 35 1.6
ref|NP_348030.1| Unchracterized conserved protein, similar to Ic... 32 7.8
>ref|NP_347399.1| Transcriptional regulator, MarR family [Clostridium acetobutylicum]
gi|25303938|pir||H96993 transcription regulator, MarR
family [imported] - Clostridium acetobutylicum
gi|15023647|gb|AAK78739.1|AE007591_12 Transcriptional
regulator, MarR family [Clostridium acetobutylicum]
Length = 157
Score = 34.7 bits (78), Expect = 1.6
Identities = 14/43 (32%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Frame = +3
Query: 192 HSTHK*HSNIFTKYQERDPTVISN*TNYSFQKLVNYL-KYEEH 317
H +K H N+ ++QERD V T+ F+ +++++ KY +H
Sbjct: 100 HEIYKLHENLHKEFQERDKVVFEQVTDEQFESMLSFIEKYSKH 142
>ref|NP_348030.1| Unchracterized conserved protein, similar to IcaC of
Staphylococcus; YHJR B.subtilis family [Clostridium
acetobutylicum] gi|25500594|pir||G97072 unchracterized
conserved protein CAC1402 (similar to IcaC of
Staphylococcus and YHJR B. subtilis familyi) [imported]
- Clostridium acetobutylicum
gi|15024340|gb|AAK79370.1|AE007651_13 Unchracterized
conserved protein, similar to IcaC of Staphylococcus;
YHJR B.subtilis family [Clostridium acetobutylicum]
Length = 356
Score = 32.3 bits (72), Expect = 7.8
Identities = 21/66 (31%), Positives = 35/66 (52%), Gaps = 2/66 (3%)
Frame = -3
Query: 548 YFKLFVNIRIS--YVIF*LMEVISLCAL*LLFGTEFKGSIYLKERKGCIYLDDGQPSMMT 375
YFK F + R+S Y+ F ++ I++ L+FGT+F + G +D Q ++
Sbjct: 108 YFKGFFSKRLSKVYLPFVIINAITIILTSLIFGTKFNLKDIIFYLSGLSLIDSTQWFVIA 167
Query: 374 LLVIYL 357
+LV YL
Sbjct: 168 ILVFYL 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 598,240,332
Number of Sequences: 1393205
Number of extensions: 12000470
Number of successful extensions: 27231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27220
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38375267554
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
