Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000891A_C01 KMC000891A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD39224.1|AF149851_5 putative cell membrane protein [Pseudom... 33 1.7
gb|AAD03486.1| MADS1 [Corylus avellana] 32 3.8
gb|EAA36316.1| hypothetical protein [Neurospora crassa] 32 3.8
gb|AAA66570.1| unknown protein [Saimiriine herpesvirus 2] 32 5.0
ref|NP_811060.1| O-acetyl transferase [Bacteroides thetaiotaomic... 32 5.0
>gb|AAD39224.1|AF149851_5 putative cell membrane protein [Pseudomonas stutzeri KC]
gi|28316704|gb|AAF33129.2|AF196567_5 putative membrane
protein [Pseudomonas stutzeri]
Length = 417
Score = 33.5 bits (75), Expect = 1.7
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 12/147 (8%)
Frame = -2
Query: 533 IIFLQFSINWKSVEVFGIPR-NAAFGMTVNL*EHSYQVLELGLFSFV*WCFTQCLTY*TV 357
++ LQ W ++ V +P GM + + +H + E+GLF Q +
Sbjct: 6 VVGLQLLFGWMNL-VLAVPSIYLMLGMPLVMRQHGWSGAEIGLF--------QLAALPAI 56
Query: 356 FFT*YLGLLSIWVLSV-LVKGHMLKFPFMCCCYLLAQF----------RGIMLMSSSGAL 210
F LL++ V V L +GH + + + C LLA + IML + + A+
Sbjct: 57 FKF----LLAVPVQRVRLGRGHFVHWLLLLCALLLALYWLIGRHNLIGDRIMLFALTFAI 112
Query: 209 AMAEGYAILPMTTLGCFFLPKPLVFRA 129
++A +A +P+ L +LP+ RA
Sbjct: 113 SIAATWADIPLNALAVQWLPRSEQLRA 139
>gb|AAD03486.1| MADS1 [Corylus avellana]
Length = 242
Score = 32.3 bits (72), Expect = 3.8
Identities = 18/46 (39%), Positives = 23/46 (49%)
Frame = +2
Query: 359 QFNR*DIG*NTTRQKKRDLTPGPGNYVLRD*QSFQKRRSWECQKLQ 496
QF R I N Q+ ++ PG GNY L QSF R ++ LQ
Sbjct: 181 QFLRAKIAENERNQQNLNVMPGGGNYELMQSQSFDSRNYFQVDALQ 226
>gb|EAA36316.1| hypothetical protein [Neurospora crassa]
Length = 1253
Score = 32.3 bits (72), Expect = 3.8
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = -1
Query: 420 GVRSLFFCLVVFYPMSHLLNCVLYVIFGSSQYLGLVRFSQGAH 292
GVRS C+V FYP H C Y G Y L S GAH
Sbjct: 870 GVRSEDPCIVTFYPSMHAAYCNEYPTLGKLTYRALK--SSGAH 910
>gb|AAA66570.1| unknown protein [Saimiriine herpesvirus 2]
Length = 79
Score = 32.0 bits (71), Expect = 5.0
Identities = 14/45 (31%), Positives = 27/45 (59%)
Frame = -1
Query: 399 CLVVFYPMSHLLNCVLYVIFGSSQYLGLVRFSQGAHVEVPVYVLL 265
CL+ P H++ V Y+I +++ L VR+ Q + ++ P+ +LL
Sbjct: 26 CLMQTTPQDHIVKQVCYLIASNNRILDAVRYLQTSVIKSPIVLLL 70
>ref|NP_811060.1| O-acetyl transferase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339457|gb|AAO77254.1| O-acetyl transferase
[Bacteroides thetaiotaomicron VPI-5482]
Length = 337
Score = 32.0 bits (71), Expect = 5.0
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -1
Query: 411 SLFFCLVVFYPMSHLLNCVLYVIFGSSQYLGLVRFSQGA-HVEVPVYV 271
+LF C ++FY + +L + L ++F ++ +G F G H+E+P+Y+
Sbjct: 130 ALFNCNILFYLIHYLRDKHLSLMFAATLLIGCTGFFLGKFHIELPLYI 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,985,373
Number of Sequences: 1393205
Number of extensions: 10322518
Number of successful extensions: 22254
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22248
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
