Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000885A_C01 KMC000885A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC16465.1| contains ESTs AU162548(R3914),AU032339(R3914)~si... 165 4e-40
ref|NP_566416.1| expressed protein; protein id: At3g12260.1, sup... 164 8e-40
ref|NP_786985.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomp... 60 2e-08
gb|EAA02579.1| agCP3094 [Anopheles gambiae str. PEST] 59 4e-08
gb|AAH42332.1| Similar to NADH dehydrogenase (ubiquinone) 1 alph... 58 8e-08
>dbj|BAC16465.1| contains ESTs AU162548(R3914),AU032339(R3914)~similar to
Arabidopsis thaliana chromosome 3,At3g12260~unknown
protein [Oryza sativa (japonica cultivar-group)]
gi|27261102|dbj|BAC45215.1| OJ1340_C08.30 [Oryza sativa
(japonica cultivar-group)]
Length = 131
Score = 165 bits (418), Expect = 4e-40
Identities = 84/124 (67%), Positives = 97/124 (77%)
Frame = -2
Query: 598 RVPPNSVSLEEARHRVFDFFRIACRSLPSVMETYNLYDVASVSQLRSTVASEIRKNTHVT 419
+VPPNS SLEEARHRVFDFFR ACR++PS+ME YNL DV + SQLRST+A EIRKN VT
Sbjct: 9 KVPPNSASLEEARHRVFDFFRQACRAIPSIMEIYNLDDVVTPSQLRSTIAKEIRKNQGVT 68
Query: 418 DPKVIDMLLFKATEELKDIVDHAKQRHHVVGQYVVGRHKLEQQELGSKGQTISPFLQNFY 239
+PKVIDMLLFK EEL +I +HAKQRHHV+GQYVVG+ L Q K Q S FL+ FY
Sbjct: 69 NPKVIDMLLFKGMEELGNITEHAKQRHHVIGQYVVGQKGLVQDM--EKDQGSSDFLKKFY 126
Query: 238 KTNY 227
+NY
Sbjct: 127 TSNY 130
>ref|NP_566416.1| expressed protein; protein id: At3g12260.1, supported by cDNA:
gi_15450991, supported by cDNA: gi_17978774 [Arabidopsis
thaliana] gi|12322051|gb|AAG51074.1|AC069472_14 unknown
protein; 35018-33933 [Arabidopsis thaliana]
gi|15450992|gb|AAK96767.1| unknown protein [Arabidopsis
thaliana] gi|15795147|dbj|BAB03135.1|
gene_id:MQC3.9~similar to unknown protein~sp|Q02366
[Arabidopsis thaliana] gi|17978775|gb|AAL47381.1|
unknown protein [Arabidopsis thaliana]
Length = 133
Score = 164 bits (415), Expect = 8e-40
Identities = 77/124 (62%), Positives = 97/124 (78%)
Frame = -2
Query: 595 VPPNSVSLEEARHRVFDFFRIACRSLPSVMETYNLYDVASVSQLRSTVASEIRKNTHVTD 416
VPPNS +L EAR RVFDFFR ACRS+P++M+ YNL DV + SQLR ++++IR N H+TD
Sbjct: 12 VPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIRNNAHITD 71
Query: 415 PKVIDMLLFKATEELKDIVDHAKQRHHVVGQYVVGRHKLEQQELGSKGQTISPFLQNFYK 236
PKVID+L+FK EEL DIVDHAKQRHH++GQYVVG + Q G+K Q + FL+NFY
Sbjct: 72 PKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVGEGLV--QNTGNKDQGKTDFLKNFYT 129
Query: 235 TNYF 224
+NYF
Sbjct: 130 SNYF 133
>ref|NP_786985.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa [Bos
taurus] gi|400384|sp|Q02366|NB4M_BOVIN NADH-ubiquinone
oxidoreductase B14 subunit (Complex I-B14) (CI-B14)
gi|346536|pir||S28245 NADH2 dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain CI-B14 - bovine
gi|240|emb|CAA44896.1| NADH dehydrogenase [Bos taurus]
Length = 128
Score = 60.1 bits (144), Expect = 2e-08
Identities = 33/88 (37%), Positives = 52/88 (58%)
Frame = -2
Query: 592 PPNSVSLEEARHRVFDFFRIACRSLPSVMETYNLYDVASVSQLRSTVASEIRKNTHVTDP 413
P S + EA+ RV + +R R +P+ + + L D+ SV Q R V +KN H+TDP
Sbjct: 19 PIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQL-DI-SVKQGRDKVREMFKKNAHITDP 76
Query: 412 KVIDMLLFKATEELKDIVDHAKQRHHVV 329
+V+D+L+ K EL++ + KQR HV+
Sbjct: 77 RVVDLLVIKGKMELEETIKVWKQRTHVM 104
>gb|EAA02579.1| agCP3094 [Anopheles gambiae str. PEST]
Length = 140
Score = 59.3 bits (142), Expect = 4e-08
Identities = 34/88 (38%), Positives = 52/88 (58%)
Frame = -2
Query: 592 PPNSVSLEEARHRVFDFFRIACRSLPSVMETYNLYDVASVSQLRSTVASEIRKNTHVTDP 413
P SV EEAR RV + ++ R +P ++ Y++ SV Q R + E K+ +VTD
Sbjct: 32 PILSVDREEARKRVLNLYKAWYRQIPYIVMDYDI--PKSVEQCREKLREEFLKHKNVTDI 89
Query: 412 KVIDMLLFKATEELKDIVDHAKQRHHVV 329
+VIDML+ K ELK+ V+ KQ+ H++
Sbjct: 90 RVIDMLVIKGQMELKESVEIWKQKAHIM 117
>gb|AAH42332.1| Similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6
(14kD, B14) [Danio rerio]
Length = 128
Score = 58.2 bits (139), Expect = 8e-08
Identities = 34/88 (38%), Positives = 48/88 (53%)
Frame = -2
Query: 592 PPNSVSLEEARHRVFDFFRIACRSLPSVMETYNLYDVASVSQLRSTVASEIRKNTHVTDP 413
P S L EA+ RV + +R R P+ + Y L D+ + Q R V +N HVTDP
Sbjct: 19 PLFSRDLNEAKRRVRELYRAWYREAPNTVHAYQL-DIGT-QQCREKVREMFDRNRHVTDP 76
Query: 412 KVIDMLLFKATEELKDIVDHAKQRHHVV 329
+VIDML+ K EL++ + KQR H +
Sbjct: 77 RVIDMLVIKGKMELQETIQVWKQRTHAM 104
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,707,025
Number of Sequences: 1393205
Number of extensions: 11306256
Number of successful extensions: 52166
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51565
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
