Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000882A_C01 KMC000882A_c01
(748 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568946.1| Meiosis protein mei2-related; protein id: At5g6... 91 2e-17
dbj|BAA22374.1| Mei2-like protein [Arabidopsis thaliana] gi|9758... 75 1e-12
ref|NP_196346.1| Meiosis protein mei2-related; protein id: At5g0... 74 2e-12
gb|AAL85701.1|AF474982_5 Mei2-like protein [Hordeum vulgare subs... 54 3e-06
gb|AAC40038.1| DNA repair protein XRCC1 [Cricetulus griseus] 35 1.1
>ref|NP_568946.1| Meiosis protein mei2-related; protein id: At5g61960.1, supported by
cDNA: gi_17064919, supported by cDNA: gi_2443328
[Arabidopsis thaliana] gi|17064920|gb|AAL32614.1|
Mei2-like protein [Arabidopsis thaliana]
Length = 915
Score = 90.9 bits (224), Expect = 2e-17
Identities = 71/195 (36%), Positives = 97/195 (49%), Gaps = 1/195 (0%)
Frame = +3
Query: 165 MPSEIMDQRGVTASSHMFDDVSYAAERNVGLRKPKSIHDHYPQGRSEMAALPGSILNAPS 344
MPS+IM+QRGV+ SH +D+ +ER G K + ++ GR ++++P S
Sbjct: 1 MPSDIMEQRGVSTPSHFHEDIHITSERQFGFMKTDMMPENQG-GRDRLSSMPKS------ 53
Query: 345 PLETKAEAGLPMTQTSRSGEISQNLHLGREAGIMDVLKDSKESMNYHARSFDVRRQPASS 524
+E+ Q+S SG S S + +AR+
Sbjct: 54 --SWTSESYQLKPQSSFSG--------------------SHPSGSPNARN---------- 81
Query: 525 SYGLIGNEIVTNAGSRESSLFSSSLSDIFSQKLRLMGNGVLSDQHI-TVGSLPEEEPFKS 701
TN ESSLFSSS+SD+FS+KLRL G+ +LS TV + EEEP +S
Sbjct: 82 ---------TTNGSQWESSLFSSSMSDLFSRKLRLQGSDMLSTMSANTVVTHREEEPSES 132
Query: 702 LEEIEADTIGNLLPD 746
LEEIEA TIGNLLPD
Sbjct: 133 LEEIEAQTIGNLLPD 147
>dbj|BAA22374.1| Mei2-like protein [Arabidopsis thaliana] gi|9758396|dbj|BAB08883.1|
Mei2-like protein [Arabidopsis thaliana]
Length = 884
Score = 74.7 bits (182), Expect = 1e-12
Identities = 42/65 (64%), Positives = 49/65 (74%), Gaps = 1/65 (1%)
Frame = +3
Query: 555 TNAGSRESSLFSSSLSDIFSQKLRLMGNGVLSDQHI-TVGSLPEEEPFKSLEEIEADTIG 731
TN ESSLFSSS+SD+FS+KLRL G+ +LS TV + EEEP +SLEEIEA TIG
Sbjct: 52 TNGSQWESSLFSSSMSDLFSRKLRLQGSDMLSTMSANTVVTHREEEPSESLEEIEAQTIG 111
Query: 732 NLLPD 746
NLLPD
Sbjct: 112 NLLPD 116
>ref|NP_196346.1| Meiosis protein mei2-related; protein id: At5g07290.1 [Arabidopsis
thaliana] gi|11358504|pir||T48500 Mei2-like protein -
Arabidopsis thaliana gi|7546707|emb|CAB87285.1|
Mei2-like protein [Arabidopsis thaliana]
Length = 907
Score = 73.9 bits (180), Expect = 2e-12
Identities = 64/194 (32%), Positives = 87/194 (43%)
Frame = +3
Query: 165 MPSEIMDQRGVTASSHMFDDVSYAAERNVGLRKPKSIHDHYPQGRSEMAALPGSILNAPS 344
MPS+I++ RGV SH +D+ E+ G K ++ P+G + ++ N P+
Sbjct: 1 MPSDILEPRGVPTPSHFHEDIRITPEKQFGFMK----NNPMPEGGVDRSS------NLPT 50
Query: 345 PLETKAEAGLPMTQTSRSGEISQNLHLGREAGIMDVLKDSKESMNYHARSFDVRRQPASS 524
T L Q+S SG + + GR
Sbjct: 51 SSWTSDSYQLSQ-QSSLSGALPSFIPNGRTT----------------------------- 80
Query: 525 SYGLIGNEIVTNAGSRESSLFSSSLSDIFSQKLRLMGNGVLSDQHITVGSLPEEEPFKSL 704
TN ESSLFSSSLSD+FS+KLRL SD+ + + EEEP +SL
Sbjct: 81 ----------TNDTHWESSLFSSSLSDLFSRKLRLPR----SDKLAFMSANREEEPSESL 126
Query: 705 EEIEADTIGNLLPD 746
EE+EA TIGNLLPD
Sbjct: 127 EEMEAQTIGNLLPD 140
>gb|AAL85701.1|AF474982_5 Mei2-like protein [Hordeum vulgare subsp. vulgare]
Length = 961
Score = 53.5 bits (127), Expect = 3e-06
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 558 NAGSRESSLFSSSLSDIFSQKLRLMG-NGVLSDQHITVGSLPEEEPFKSLEEIEADTIGN 734
N E+ LFSSSL DIF +KLRL NG++ + ++EPF+ +EIEA IGN
Sbjct: 101 NITQYENGLFSSSLPDIFDKKLRLTPKNGLVGQPAEKELNHADDEPFELTQEIEAQVIGN 160
Query: 735 LLPD 746
LLPD
Sbjct: 161 LLPD 164
>gb|AAC40038.1| DNA repair protein XRCC1 [Cricetulus griseus]
Length = 633
Score = 35.0 bits (79), Expect = 1.1
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Frame = +3
Query: 288 PQGRSE-MAALPGSILNAPSPLETKAEAGLPMTQTSRSGEISQNLHLGREAGIMDVLKDS 464
PQ +++ AA P S P+P ETK+ + P + GE S+ G++ G D D+
Sbjct: 435 PQAKAKTQAAGPSSPQRPPTPKETKSPSPEPQDNSDTEGEQSE----GQDNGAED-SGDT 489
Query: 465 KESMNYHARSFDVRRQPA-----SSSYGLIGNEIVTNAGSRESSLFSSSLSDIFSQK 620
++ + A + R+ PA Y +E N S E+ L L D F K
Sbjct: 490 EDELRRVAEQREQRQPPAPGENGEDPYAGSTDENTDNEASTEADLPIPELPDFFQGK 546
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 634,821,542
Number of Sequences: 1393205
Number of extensions: 14007580
Number of successful extensions: 38111
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 36642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38088
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
