Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000881A_C01 KMC000881A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565901.1| putative ABC transporter; protein id: At2g39190... 128 4e-29
pir||T02583 probable ABC transporter At2g39190 [imported] - Arab... 128 4e-29
ref|NP_565900.1| putative ABC transporter; protein id: At2g39190... 128 4e-29
gb|EAA30246.1| hypothetical protein [Neurospora crassa] 39 0.043
pir||T08599 probable transcription factor CA150 - human gi|24601... 38 0.096
>ref|NP_565901.1| putative ABC transporter; protein id: At2g39190.1, supported by
cDNA: gi_15081812 [Arabidopsis thaliana]
gi|15081813|gb|AAK82561.1| At2g39190/T16B24.17
[Arabidopsis thaliana] gi|20197258|gb|AAM14998.1|
putative ABC transporter; alternative splicing isoform
Structure for this isoform supported by cDNA:
gi_15081812_gb_AY048299 1_ [Arabidopsis thaliana]
gi|27363424|gb|AAO11631.1| At2g39190/T16B24.17
[Arabidopsis thaliana]
Length = 374
Score = 128 bits (322), Expect = 4e-29
Identities = 64/139 (46%), Positives = 86/139 (61%)
Frame = +3
Query: 141 PKMATVIAPPPTLFSVRAATASSSRNKKKQKKPRALGNFDHMAHVVSKDMEFLKRGIYKG 320
P +T+ P L A A R K+++ P H A VV D++FLK I G
Sbjct: 8 PSCSTIPIP---LRRTSFAVAELRRLKQRRAIPPVSVGLGHFADVVRNDVDFLKNKIGIG 64
Query: 321 VAWANDAFRIPQIAKKVDDLVWLRNLEDPLAASVSAPFWPQPWYPGLTGVDLLMYDLKAL 500
+ WAN+AFR+P++ K ++L WLR+LED + ++ + WPQP Y GLTGVDL M D+KAL
Sbjct: 65 LRWANEAFRVPEVTKSAEELFWLRHLEDHTSQNLKSQSWPQPSYSGLTGVDLFMADVKAL 124
Query: 501 EAYAAYFYYSSKIWSKPLP 557
E YA YFY SK+WS+PLP
Sbjct: 125 ETYAGYFYSLSKMWSRPLP 143
>pir||T02583 probable ABC transporter At2g39190 [imported] - Arabidopsis
thaliana
Length = 791
Score = 128 bits (322), Expect = 4e-29
Identities = 64/139 (46%), Positives = 86/139 (61%)
Frame = +3
Query: 141 PKMATVIAPPPTLFSVRAATASSSRNKKKQKKPRALGNFDHMAHVVSKDMEFLKRGIYKG 320
P +T+ P L A A R K+++ P H A VV D++FLK I G
Sbjct: 8 PSCSTIPIP---LRRTSFAVAELRRLKQRRAIPPVSVGLGHFADVVRNDVDFLKNKIGIG 64
Query: 321 VAWANDAFRIPQIAKKVDDLVWLRNLEDPLAASVSAPFWPQPWYPGLTGVDLLMYDLKAL 500
+ WAN+AFR+P++ K ++L WLR+LED + ++ + WPQP Y GLTGVDL M D+KAL
Sbjct: 65 LRWANEAFRVPEVTKSAEELFWLRHLEDHTSQNLKSQSWPQPSYSGLTGVDLFMADVKAL 124
Query: 501 EAYAAYFYYSSKIWSKPLP 557
E YA YFY SK+WS+PLP
Sbjct: 125 ETYAGYFYSLSKMWSRPLP 143
>ref|NP_565900.1| putative ABC transporter; protein id: At2g39190.2 [Arabidopsis
thaliana] gi|20197257|gb|AAC28988.2| putative ABC
transporter; alternative splicing isoform gene
prediction data combined with cDNA alignment data to
generate this model [Arabidopsis thaliana]
Length = 814
Score = 128 bits (322), Expect = 4e-29
Identities = 64/139 (46%), Positives = 86/139 (61%)
Frame = +3
Query: 141 PKMATVIAPPPTLFSVRAATASSSRNKKKQKKPRALGNFDHMAHVVSKDMEFLKRGIYKG 320
P +T+ P L A A R K+++ P H A VV D++FLK I G
Sbjct: 8 PSCSTIPIP---LRRTSFAVAELRRLKQRRAIPPVSVGLGHFADVVRNDVDFLKNKIGIG 64
Query: 321 VAWANDAFRIPQIAKKVDDLVWLRNLEDPLAASVSAPFWPQPWYPGLTGVDLLMYDLKAL 500
+ WAN+AFR+P++ K ++L WLR+LED + ++ + WPQP Y GLTGVDL M D+KAL
Sbjct: 65 LRWANEAFRVPEVTKSAEELFWLRHLEDHTSQNLKSQSWPQPSYSGLTGVDLFMADVKAL 124
Query: 501 EAYAAYFYYSSKIWSKPLP 557
E YA YFY SK+WS+PLP
Sbjct: 125 ETYAGYFYSLSKMWSRPLP 143
>gb|EAA30246.1| hypothetical protein [Neurospora crassa]
Length = 1059
Score = 38.9 bits (89), Expect = 0.043
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +3
Query: 21 TSLLPIPIFFSSSSSSSHSTT---TPSTSTITAHSIQLTLQQPPKMATVIAPPPTLFSVR 191
+SLL +P SSSSS+S ST+ +P TST T ++ PK+ T PPP L
Sbjct: 108 SSLLSVPSSSSSSSSTSTSTSATSSPRTSTFTTSRLR------PKLQTCAVPPPFLVLGS 161
Query: 192 AATASSSRNKKKQ 230
++ +R K+++
Sbjct: 162 RYCSAHARAKRRE 174
>pir||T08599 probable transcription factor CA150 - human
gi|2460124|gb|AAB80727.1| putative transcription factor
CA150 [Homo sapiens]
Length = 1098
Score = 37.7 bits (86), Expect = 0.096
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +3
Query: 9 STTHTSLLPIPIFFSSSSSSSHSTTTPSTSTITA----HSIQLTLQQPPKMATVIAPPPT 176
++T T+ P P +S+SSS+ S+TT +T+T T+ S T Q P A +A P
Sbjct: 258 ASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTV 317
Query: 177 LFSVRAATAS 206
S A TA+
Sbjct: 318 SVSTPARTAT 327
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,004,172
Number of Sequences: 1393205
Number of extensions: 11508138
Number of successful extensions: 97888
Number of sequences better than 10.0: 201
Number of HSP's better than 10.0 without gapping: 59382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85683
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
