Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000880A_C01 KMC000880A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189368.1| hypothetical protein; protein id: At3g27325.1 [... 52 6e-06
ref|NP_217206.1| hypothetical protein Rv2690c [Mycobacterium tub... 32 4.9
ref|NP_507095.1| glutathione-S-transferase family member [Caenor... 32 6.4
ref|NP_456490.1| flagellar transcriptional activator [Salmonella... 31 8.4
>ref|NP_189368.1| hypothetical protein; protein id: At3g27325.1 [Arabidopsis thaliana]
Length = 1048
Score = 51.6 bits (122), Expect = 6e-06
Identities = 27/78 (34%), Positives = 44/78 (55%)
Frame = -2
Query: 538 NSFLFSFTGVPIRNVRLSFVYLIAGYWSYFSGLALAPYGAFYVMAAVGGFSFALRMLHRR 359
+S L SF +R +YL+AGY+ +FSGL LAPY FY +A++G S L++
Sbjct: 974 SSILRSFPFFSGHQIRPHHIYLLAGYYCFFSGLELAPYKVFYAIASLGYISLTLKI---S 1030
Query: 358 YGEKKEVTYVSRKHSHRH 305
K ++ + ++ HR+
Sbjct: 1031 QVNKNDLRFRTKSRIHRN 1048
>ref|NP_217206.1| hypothetical protein Rv2690c [Mycobacterium tuberculosis H37Rv]
gi|15842228|ref|NP_337265.1| amino acid permease,
putative [Mycobacterium tuberculosis CDC1551]
gi|7477322|pir||E70529 hypothetical protein Rv2690c -
Mycobacterium tuberculosis (strain H37RV)
gi|3261795|emb|CAB09497.1| hypothetical protein Rv2690c
[Mycobacterium tuberculosis H37Rv]
gi|13882518|gb|AAK47079.1| amino acid permease, putative
[Mycobacterium tuberculosis CDC1551]
Length = 657
Score = 32.0 bits (71), Expect = 4.9
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 10/47 (21%)
Frame = -2
Query: 424 GAFYVMAAVGGFSFALRMLHRRY----------GEKKEVTYVSRKHS 314
GA+ + A+GGF ++++HR Y E+ E+T SR H+
Sbjct: 465 GAWIAIVAMGGFFMMMKLIHRHYDAVNRELAEQAEEAEITLPSRNHA 511
>ref|NP_507095.1| glutathione-S-transferase family member [Caenorhabditis elegans]
gi|7499609|pir||T21221 hypothetical protein F21H7.1 -
Caenorhabditis elegans gi|3876211|emb|CAB07589.1|
Hypothetical protein F21H7.1 [Caenorhabditis elegans]
Length = 218
Score = 31.6 bits (70), Expect = 6.4
Identities = 23/64 (35%), Positives = 32/64 (49%), Gaps = 2/64 (3%)
Frame = -2
Query: 529 LFSFTGVPIRNVRLSFVYLIAGYWS-YFSGLA-LAPYGAFYVMAAVGGFSFALRMLHRRY 356
LF GVP +VRL + + G+ S FS L P+G F V+ ++ GF A RY
Sbjct: 21 LFHLGGVPYEDVRLPTINAVPGFQSDEFSALKDKTPFGRFTVL-SIDGFDLAQSSAIHRY 79
Query: 355 GEKK 344
+K
Sbjct: 80 LARK 83
>ref|NP_456490.1| flagellar transcriptional activator [Salmonella enterica subsp.
enterica serovar Typhi] gi|29141435|ref|NP_804777.1|
flagellar transcriptional activator [Salmonella enterica
subsp. enterica serovar Typhi Ty2]
gi|25300768|pir||AH0746 flagellar transcription
activator STY2133 [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16503170|emb|CAD05675.1| flagellar transcriptional
activator [Salmonella enterica subsp. enterica serovar
Typhi] gi|29137062|gb|AAO68626.1| flagellar
transcriptional activator [Salmonella enterica subsp.
enterica serovar Typhi Ty2]
Length = 194
Score = 31.2 bits (69), Expect = 8.4
Identities = 26/79 (32%), Positives = 37/79 (45%)
Frame = -1
Query: 527 LFLHRGPYPQC*TVFCLSHSWILVLFFWSGFGALRSILCDGCCRGLFLCSKNVT*KVRGK 348
L+L + P P ++ L+ +W LV F SG L S CC G F+ + + G
Sbjct: 103 LYLEQCPQPPEGSLLALTRAWTLVRFVESGLLELSSC---NCCGGNFITHAH---QPVGS 156
Query: 347 ERGYLCQPKAFSQALKSSK 291
LCQP S+A+K K
Sbjct: 157 FACSLCQPP--SRAVKRRK 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,052,424
Number of Sequences: 1393205
Number of extensions: 9761230
Number of successful extensions: 20469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20464
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
