Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000879A_C01 KMC000879A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567243.1| putative cullin-like 1 protein; protein id: At4... 64 1e-09
pir||T01092 cullin-like protein T10P11.14.1 - Arabidopsis thalia... 64 1e-09
dbj|BAB64732.1| cullin-like protein [Oryza sativa (japonica cult... 63 3e-09
gb|AAK53839.1|AC011806_16 Putative cullin [Oryza sativa] 63 3e-09
dbj|BAC10548.1| cullin-like protein1 [Pisum sativum] 62 5e-09
>ref|NP_567243.1| putative cullin-like 1 protein; protein id: At4g02570.1, supported
by cDNA: gi_15028160 [Arabidopsis thaliana]
gi|15028161|gb|AAK76704.1| putative cullin 1 protein
[Arabidopsis thaliana] gi|22136936|gb|AAM91812.1|
putative cullin 1 protein [Arabidopsis thaliana]
Length = 738
Score = 64.3 bits (155), Expect = 1e-09
Identities = 28/34 (82%), Positives = 33/34 (96%)
Frame = -1
Query: 568 KPDVKAIKKRIEDWISRDYLEREKDNPNMFRYLA 467
KPD+KAIKKR+ED I+RDYLER+K+NPNMFRYLA
Sbjct: 705 KPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738
>pir||T01092 cullin-like protein T10P11.14.1 - Arabidopsis thaliana
gi|2281115|gb|AAC78267.1|AAC78267 putative cullin-like 1
protein [Arabidopsis thaliana]
gi|7269017|emb|CAB80750.1| putative cullin-like 1
protein [Arabidopsis thaliana]
Length = 676
Score = 64.3 bits (155), Expect = 1e-09
Identities = 28/34 (82%), Positives = 33/34 (96%)
Frame = -1
Query: 568 KPDVKAIKKRIEDWISRDYLEREKDNPNMFRYLA 467
KPD+KAIKKR+ED I+RDYLER+K+NPNMFRYLA
Sbjct: 643 KPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 676
>dbj|BAB64732.1| cullin-like protein [Oryza sativa (japonica cultivar-group)]
gi|15528696|dbj|BAB64762.1| cullin-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 732
Score = 62.8 bits (151), Expect = 3e-09
Identities = 28/34 (82%), Positives = 32/34 (93%)
Frame = -1
Query: 568 KPDVKAIKKRIEDWISRDYLEREKDNPNMFRYLA 467
KPD KAIKKRIED I+RDYLER+KDNPN++RYLA
Sbjct: 699 KPDFKAIKKRIEDLITRDYLERDKDNPNVYRYLA 732
>gb|AAK53839.1|AC011806_16 Putative cullin [Oryza sativa]
Length = 750
Score = 62.8 bits (151), Expect = 3e-09
Identities = 28/34 (82%), Positives = 32/34 (93%)
Frame = -1
Query: 568 KPDVKAIKKRIEDWISRDYLEREKDNPNMFRYLA 467
KPD KAIKKRIED I+RDYLER+KDNPN++RYLA
Sbjct: 717 KPDFKAIKKRIEDLITRDYLERDKDNPNVYRYLA 750
>dbj|BAC10548.1| cullin-like protein1 [Pisum sativum]
Length = 742
Score = 62.0 bits (149), Expect = 5e-09
Identities = 28/34 (82%), Positives = 32/34 (93%)
Frame = -1
Query: 568 KPDVKAIKKRIEDWISRDYLEREKDNPNMFRYLA 467
KPDVKAIKKRIED ISRDYLER++DN N+F+YLA
Sbjct: 709 KPDVKAIKKRIEDLISRDYLERDRDNANLFKYLA 742
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,323,619
Number of Sequences: 1393205
Number of extensions: 13022618
Number of successful extensions: 60288
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 38656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53667
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
