Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000875A_C02 KMC000875A_c02
(695 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM27546.1|AF498400_12 ORF_12 [Pseudomonas aeruginosa] gi|275... 37 0.26
ref|NP_653489.1| hypothetical protein predicted by GeneMark [Bac... 33 2.9
ref|NP_561126.1| hypothetical protein [Clostridium perfringens] ... 32 6.5
pir||T18746 Na+/H+-exchanging protein - Caenorhabditis elegans 32 8.4
ref|NP_510622.2| Na/H eXchanger NHX-1 (nhx-1) [Caenorhabditis el... 32 8.4
>gb|AAM27546.1|AF498400_12 ORF_12 [Pseudomonas aeruginosa] gi|27502118|gb|AAO17399.1| unknown
[Pseudomonas aeruginosa]
Length = 474
Score = 37.0 bits (84), Expect = 0.26
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -1
Query: 227 IVFYLFFICFKFSNDIKSSISRLQILLEVLSLFTFIFI*DVTMG 96
++ F+C+ FS D+ S + L I VL+LF +IF+ +++G
Sbjct: 20 LILVFLFVCYFFSFDVSSYVDELSIAFIVLALFVYIFLSFLSLG 63
>ref|NP_653489.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
A2012]
Length = 128
Score = 33.5 bits (75), Expect = 2.9
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Frame = -1
Query: 656 VTEAVNIKILFLIIRITGPPCFWISLEVWNHGARQMVSIQKQTCLSLSPLPIIISVNFTP 477
+ +++ I L I G CFW + N ++ +T +S S L I F P
Sbjct: 1 MNQSIRYTIAVLFAIIGGTICFWTN----NQLGENIIFNGIETLVSASILGGYIFFLFNP 56
Query: 476 HLVMYD*M*--MAHLIGGVVLF*T-----PLELMLAFITGLWNWFL 360
M M ++GG + + PL+L AF GLW WF+
Sbjct: 57 EENAQKTMLLTMIGIVGGCISYSMTNYTLPLQLSSAFFHGLWTWFI 102
>ref|NP_561126.1| hypothetical protein [Clostridium perfringens]
gi|18143867|dbj|BAB79916.1| hypothetical protein
[Clostridium perfringens str. 13]
Length = 293
Score = 32.3 bits (72), Expect = 6.5
Identities = 25/90 (27%), Positives = 47/90 (51%), Gaps = 1/90 (1%)
Frame = -3
Query: 267 RAKFKRIVY*IVKYSFLPFFYLF*VLK*Y*IFN-F*TSDFIGSLIFVYIYIYIRRDDGVK 91
++ F+R+VY VKY + +F +F +L N +SDFI +LI Y Y +
Sbjct: 147 KSNFERLVYTRVKYLGIIYFIIFAILIAIENLNSIMSSDFIVNLISNYNQHYNNMARVIS 206
Query: 90 VMWGMCSLVIISKCLLKGLNNISKCHFNFL 1
V+ G+ +V + + K +N++ C+ ++
Sbjct: 207 VL-GVVLIVALILIIKKSFSNLNLCYEEYI 235
>pir||T18746 Na+/H+-exchanging protein - Caenorhabditis elegans
Length = 478
Score = 32.0 bits (71), Expect = 8.4
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 2/41 (4%)
Frame = +1
Query: 169 IEDLISFENLKQIKKR*KTIFYNSIHYSFE--LCSVEAVFG 285
I+ L+SF N+K K++F + I +SFE +C VEA+ G
Sbjct: 375 IKPLVSFLNVKIDNAYDKSLFQSCIEHSFEDTMCGVEAIIG 415
>ref|NP_510622.2| Na/H eXchanger NHX-1 (nhx-1) [Caenorhabditis elegans]
gi|21615431|emb|CAA92219.2| C. elegans NHX-1 protein
(corresponding sequence B0395.1) [Caenorhabditis
elegans] gi|21615497|emb|CAB09132.2| C. elegans NHX-1
protein (corresponding sequence B0395.1) [Caenorhabditis
elegans]
Length = 480
Score = 32.0 bits (71), Expect = 8.4
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 2/41 (4%)
Frame = +1
Query: 169 IEDLISFENLKQIKKR*KTIFYNSIHYSFE--LCSVEAVFG 285
I+ L+SF N+K K++F + I +SFE +C VEA+ G
Sbjct: 377 IKPLVSFLNVKIDNAYDKSLFQSCIEHSFEDTMCGVEAIIG 417
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 601,110,621
Number of Sequences: 1393205
Number of extensions: 13560619
Number of successful extensions: 32500
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 31167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32439
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
