Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000872A_C01 KMC000872A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF23207.1|AC016795_20 putative ubiquitin carboxyl-terminal h... 108 6e-23
gb|AAO22588.1| putative ubiquitin carboxyl-terminal hydrolase [A... 108 6e-23
gb|AAG42754.1|AF302663_1 ubiquitin-specific protease 12 [Arabido... 105 6e-22
ref|NP_568171.1| ubiquitin-specific protease 12 (UBP12); protein... 105 6e-22
dbj|BAB11409.1| ubiquitin carboxyl-terminal hydrolase [Arabidops... 105 6e-22
>gb|AAF23207.1|AC016795_20 putative ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]
Length = 1124
Score = 108 bits (270), Expect = 6e-23
Identities = 47/57 (82%), Positives = 52/57 (90%)
Frame = -2
Query: 628 PEYLQDSDIVSNRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN 458
P+YL D+D+V NRFQRRDVYGAWEQYLGLEH DNAPKR+YA NQNRH +EKPVKIYN
Sbjct: 1068 PDYLLDTDVVYNRFQRRDVYGAWEQYLGLEHIDNAPKRAYAANQNRHAYEKPVKIYN 1124
>gb|AAO22588.1| putative ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]
Length = 1115
Score = 108 bits (270), Expect = 6e-23
Identities = 47/57 (82%), Positives = 52/57 (90%)
Frame = -2
Query: 628 PEYLQDSDIVSNRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN 458
P+YL D+D+V NRFQRRDVYGAWEQYLGLEH DNAPKR+YA NQNRH +EKPVKIYN
Sbjct: 1059 PDYLLDTDVVYNRFQRRDVYGAWEQYLGLEHIDNAPKRAYAANQNRHAYEKPVKIYN 1115
>gb|AAG42754.1|AF302663_1 ubiquitin-specific protease 12 [Arabidopsis thaliana]
Length = 1116
Score = 105 bits (261), Expect = 6e-22
Identities = 46/57 (80%), Positives = 51/57 (88%)
Frame = -2
Query: 628 PEYLQDSDIVSNRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN 458
PEYLQD+D+V NRFQRRDVYGA+EQYLGLEH D PKR+YA NQNRH +EKPVKIYN
Sbjct: 1060 PEYLQDTDVVYNRFQRRDVYGAFEQYLGLEHADTTPKRAYAANQNRHAYEKPVKIYN 1116
>ref|NP_568171.1| ubiquitin-specific protease 12 (UBP12); protein id: At5g06600.1,
supported by cDNA: gi_11993470 [Arabidopsis thaliana]
Length = 1116
Score = 105 bits (261), Expect = 6e-22
Identities = 46/57 (80%), Positives = 51/57 (88%)
Frame = -2
Query: 628 PEYLQDSDIVSNRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN 458
PEYLQD+D+V NRFQRRDVYGA+EQYLGLEH D PKR+YA NQNRH +EKPVKIYN
Sbjct: 1060 PEYLQDTDVVYNRFQRRDVYGAFEQYLGLEHADTTPKRAYAANQNRHAYEKPVKIYN 1116
>dbj|BAB11409.1| ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]
Length = 1126
Score = 105 bits (261), Expect = 6e-22
Identities = 46/57 (80%), Positives = 51/57 (88%)
Frame = -2
Query: 628 PEYLQDSDIVSNRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN 458
PEYLQD+D+V NRFQRRDVYGA+EQYLGLEH D PKR+YA NQNRH +EKPVKIYN
Sbjct: 1070 PEYLQDTDVVYNRFQRRDVYGAFEQYLGLEHADTTPKRAYAANQNRHAYEKPVKIYN 1126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,489,040
Number of Sequences: 1393205
Number of extensions: 11199905
Number of successful extensions: 24565
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24545
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
