Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000871A_C01 KMC000871A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FSI|A Chain A, Crystal Structure Of Cyclic Nucleotide Phosp... 100 4e-40
ref|NP_193628.1| putative protein; protein id: At4g18930.1, supp... 100 4e-40
ref|NP_193629.1| hypothetical protein; protein id: At4g18940.1 [... 72 5e-25
ref|NP_042884.1| putative DNA-directed RNA polymerase [Human her... 41 0.010
ref|NP_193602.1| extensin-like protein; protein id: At4g18670.1 ... 39 0.040
>pdb|1FSI|A Chain A, Crystal Structure Of Cyclic Nucleotide Phosphodiesterase
Of Appr>p From Arabidopsis Thaliana
gi|11513545|pdb|1FSI|B Chain B, Crystal Structure Of
Cyclic Nucleotide Phosphodiesterase Of Appr>p From
Arabidopsis Thaliana gi|11513546|pdb|1FSI|C Chain C,
Crystal Structure Of Cyclic Nucleotide Phosphodiesterase
Of Appr>p From Arabidopsis Thaliana
gi|18655429|pdb|1JH6|A Chain A, Semi-Reduced Cyclic
Nucleotide Phosphodiesterase From Arabidopsis Thaliana
gi|18655430|pdb|1JH6|B Chain B, Semi-Reduced Cyclic
Nucleotide Phosphodiesterase From Arabidopsis Thaliana
gi|18655431|pdb|1JH7|A Chain A, Semi-Reduced
Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase From
Arabidopsis Thaliana
Length = 189
Score = 100 bits (250), Expect(2) = 4e-40
Identities = 47/75 (62%), Positives = 58/75 (76%)
Frame = -2
Query: 326 NHFGYKSSITYMPHLSLLYGDLTDEEKQKAQERAKVLDYSLSGLSFEITRLALYKTDTED 147
NHF ++ YMPHLSLLY +LT+EEK+ AQE+A LD SL GLSF + RLAL KTDTED
Sbjct: 106 NHFNCSTTTPYMPHLSLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTED 165
Query: 146 KTLKSWEKIAECTLS 102
KTL++WE +A C L+
Sbjct: 166 KTLETWETVAVCNLN 180
Score = 85.5 bits (210), Expect(2) = 4e-40
Identities = 38/73 (52%), Positives = 49/73 (67%)
Frame = -1
Query: 537 GPHFEPHITVVGAITLTADDALNKLRSACEELKAFQVTVDRVAAGTFFYQCVYLLLHPSP 358
GP F PH+TV + LTAD+A SAC+ LKA+ TVDRV+ GTFF+QCV+LLL +P
Sbjct: 36 GPRFVPHVTVAVSAYLTADEAKKMFESACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTP 95
Query: 357 PLVETSAHCNKPF 319
++E HC F
Sbjct: 96 EVMEAGEHCKNHF 108
>ref|NP_193628.1| putative protein; protein id: At4g18930.1, supported by cDNA:
gi_17065491, supported by cDNA: gi_20148602 [Arabidopsis
thaliana] gi|7484882|pir||T05030 cyclic
phosphodiesterase (EC 3.1.4.-) - Arabidopsis thaliana
gi|2065013|emb|CAA72363.1| cyclic phosphodiesterase
[Arabidopsis thaliana] gi|2832621|emb|CAA16750.1|
putative protein [Arabidopsis thaliana]
gi|7268687|emb|CAB78895.1| putative protein [Arabidopsis
thaliana] gi|17065492|gb|AAL32900.1| protein kinase -
like protein [Arabidopsis thaliana]
gi|20148603|gb|AAM10192.1| protein kinase-like protein
[Arabidopsis thaliana]
Length = 181
Score = 100 bits (250), Expect(2) = 4e-40
Identities = 47/75 (62%), Positives = 58/75 (76%)
Frame = -2
Query: 326 NHFGYKSSITYMPHLSLLYGDLTDEEKQKAQERAKVLDYSLSGLSFEITRLALYKTDTED 147
NHF ++ YMPHLSLLY +LT+EEK+ AQE+A LD SL GLSF + RLAL KTDTED
Sbjct: 106 NHFNCSTTTPYMPHLSLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTED 165
Query: 146 KTLKSWEKIAECTLS 102
KTL++WE +A C L+
Sbjct: 166 KTLETWETVAVCNLN 180
Score = 85.5 bits (210), Expect(2) = 4e-40
Identities = 38/73 (52%), Positives = 49/73 (67%)
Frame = -1
Query: 537 GPHFEPHITVVGAITLTADDALNKLRSACEELKAFQVTVDRVAAGTFFYQCVYLLLHPSP 358
GP F PH+TV + LTAD+A SAC+ LKA+ TVDRV+ GTFF+QCV+LLL +P
Sbjct: 36 GPRFVPHVTVAVSAYLTADEAKKMFESACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTP 95
Query: 357 PLVETSAHCNKPF 319
++E HC F
Sbjct: 96 EVMEAGEHCKNHF 108
>ref|NP_193629.1| hypothetical protein; protein id: At4g18940.1 [Arabidopsis
thaliana] gi|7484883|pir||T05031 cyclic
phosphodiesterase homolog F13C5.110 - Arabidopsis
thaliana gi|2832622|emb|CAA16751.1| hypothetical protein
[Arabidopsis thaliana] gi|7268688|emb|CAB78896.1|
hypothetical protein [Arabidopsis thaliana]
gi|22136634|gb|AAM91636.1| unknown protein [Arabidopsis
thaliana]
Length = 196
Score = 72.0 bits (175), Expect(2) = 5e-25
Identities = 38/75 (50%), Positives = 52/75 (68%)
Frame = -2
Query: 323 HFGYKSSITYMPHLSLLYGDLTDEEKQKAQERAKVLDYSLSGLSFEITRLALYKTDTEDK 144
HF + Y+PH+S+LYGDLT+ EK+KA E+A LD SL GL+F+I R+AL+ TD +
Sbjct: 125 HFKPFTGKFYVPHMSILYGDLTEREKKKALEKAYTLDSSLDGLNFKINRVALWITDAD-- 182
Query: 143 TLKSWEKIAECTLSS 99
+ SW K+ E TL S
Sbjct: 183 -VGSWVKVDEHTLIS 196
Score = 63.9 bits (154), Expect(2) = 5e-25
Identities = 29/70 (41%), Positives = 45/70 (63%), Gaps = 2/70 (2%)
Frame = -1
Query: 537 GPHFEPHITVVGAIT--LTADDALNKLRSACEELKAFQVTVDRVAAGTFFYQCVYLLLHP 364
GP F+PH+T+VG LTA +A +SACE K + TVD+V+AGT ++QC+Y+ L
Sbjct: 52 GPAFDPHLTLVGPFPYKLTASEAKRMFKSACEGFKVYPATVDQVSAGTSYFQCLYVSLRH 111
Query: 363 SPPLVETSAH 334
+ ++ + H
Sbjct: 112 TVEVMNAAGH 121
>ref|NP_042884.1| putative DNA-directed RNA polymerase [Human herpesvirus 6]
gi|9628405|ref|NP_042996.1| putative DNA-directed RNA
polymerase [Human herpesvirus 6]
gi|853965|emb|CAA58322.1| DR2 [Human herpesvirus 6]
gi|853966|emb|CAA58420.1| DR2 [Human herpesvirus 6]
Length = 620
Score = 40.8 bits (94), Expect = 0.010
Identities = 26/60 (43%), Positives = 32/60 (53%)
Frame = -2
Query: 533 PTSNPTSPSLEPSP*PPTTPSTSSGQRARSSRPSKSPLTVSPPAPSSISVFISSFIPLLR 354
P S + PS P P PP+T + SS PS SP +SPP+P S S S FIP +R
Sbjct: 505 PLSAVSRPSAPPVP-PPSTARVRFFLSSSSSSPSYSPAPLSPPSPVSPSSPRSPFIPPIR 563
>ref|NP_193602.1| extensin-like protein; protein id: At4g18670.1 [Arabidopsis
thaliana] gi|7484957|pir||T04859 extensin homolog
F28A21.80 - Arabidopsis thaliana
gi|4539386|emb|CAB37452.1| extensin-like protein
[Arabidopsis thaliana] gi|7268661|emb|CAB78869.1|
extensin-like protein [Arabidopsis thaliana]
Length = 839
Score = 38.9 bits (89), Expect = 0.040
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = -2
Query: 536 APTSNPTSPSLEPSP*-----PPTTPSTSSGQRARSSRPSKSPLTVSPPAPSS 393
+P +P SPS+ PSP PP+TP TS G S P+ S SPP PS+
Sbjct: 515 SPGGSPPSPSISPSPPITVPSPPSTP-TSPGSPPSPSSPTPSSPIPSPPTPST 566
Score = 37.0 bits (84), Expect = 0.15
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -2
Query: 536 APTSNPTSPSLEPSP*-----PPTTPSTSSGQRARSSRPSKSPLTVSPPAP 399
+P +P SPS+ PSP PPTTPS + S PS T SP +P
Sbjct: 418 SPGGSPPSPSISPSPPITVPSPPTTPSPGGSPPSPSIVPSPPSTTPSPGSP 468
Score = 32.7 bits (73), Expect = 2.8
Identities = 28/72 (38%), Positives = 31/72 (42%), Gaps = 14/72 (19%)
Frame = -2
Query: 536 APTSNPTSPSLEPSP*PPT---------TPST-----SSGQRARSSRPSKSPLTVSPPAP 399
+P S PTSP PSP PT TPST S GQ + P SP P P
Sbjct: 535 SPPSTPTSPGSPPSPSSPTPSSPIPSPPTPSTPPTPISPGQNSPPIIP--SPPFTGPSPP 592
Query: 398 SSISVFISSFIP 363
SS S + IP
Sbjct: 593 SSPSPPLPPVIP 604
Score = 32.3 bits (72), Expect = 3.7
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -2
Query: 536 APTSNPTSPSLEPSP*PPTTPSTSSGQRARSSRPSKSPLTVSPPAPS 396
+P S+PT+P+ P PP++P+T + + S P+ SPP+PS
Sbjct: 480 SPPSSPTTPT--PGGSPPSSPTTPTPGGSPPSSPTTPSPGGSPPSPS 524
Score = 32.3 bits (72), Expect = 3.7
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 12/60 (20%)
Frame = -2
Query: 536 APTSNPTSPSLEPS-P*PPTTPSTSSGQRARSSRPSKSPLTV-----------SPPAPSS 393
+P S+PT+P+ S P PTTPS + S PS P+TV SPP+PSS
Sbjct: 493 SPPSSPTTPTPGGSPPSSPTTPSPGGSPPSPSISPS-PPITVPSPPSTPTSPGSPPSPSS 551
Score = 32.3 bits (72), Expect = 3.7
Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 5/48 (10%)
Frame = -2
Query: 536 APTSNPTSPSLEPSP*PPTTPS-----TSSGQRARSSRPSKSPLTVSP 408
+P +P SPS+ PSP P TTPS TS P SP T +P
Sbjct: 444 SPGGSPPSPSIVPSP-PSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTP 490
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,892,146
Number of Sequences: 1393205
Number of extensions: 9596348
Number of successful extensions: 57299
Number of sequences better than 10.0: 400
Number of HSP's better than 10.0 without gapping: 42322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54308
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
